Strain

Namibia_Warthog_1980 (Region: Namibia; Strain: Warthog; Date: 1980)

Gene

pC257L

Description

Annoated by sequence mapping, putative transmembrane protein

Location

AY261366.1(-):81651-82424

GenBank Accession

CAN10166.1

Full name

Transmembrane protein C257L

CDS

ATGTACTCCGTCTGCGATGTAGTTCGTGATGCTGTGGCGCAGTCTCATCTATGCGCCTGTCCTAATGATAAACTTCCGCAGTGTAAGGGCGTCACAAAGGCCCCGCCGGAATGTTCCGTATTCCATGTAGCCAAACTACAGGACACTAAGTTTAAATGGAAGTACACATTAGACCCGCTTAAAGCTCAAAAACTCAGCCAAATTAATAAGGATATTGAAAAAGATGCAATAACGTTAAAGTTGTTATATGGCATTGAGCTTTCTCCTGAAGATTTAGAATGGTGGAAAATGCAGCGCTGCTTGATTAATAAAAAAACGGGGGCAAAGGGTGGGCAGTTCGCCAATAAGTACCTAGAACGACAGGACCTTGAACTGTTAGGCTACAGCCCCACCCCGATTATAGGAGGAGACTTCATGTTTACAGCCCTACCAGACAAGGTTTTAAGAACGATCCCTATTGCATGGGATCGTTTTTTAAACCCCGCGATGATGATATTTTTTTTAATAATTCTTTTATGTGTGATTCTTGGTATTTTTTACGTATTGGTGCGGAACACGCTCCGCCGCAAACAAAAAATTAAACAACATCAAATGGAGATTAAACGCTTCATTAAGGAAAAAGAACAGGACCCTTACATTCACACCTCATTTGAGAGCTGGCCCGCCGATCCCAACAAGGAATGGAAGGAGCTTATTCCCGTGTATGAGGCTCAGGGGTACTGTATGGCTGATTATAGAAAAAAGCTGGGAATGCCTCCTGGCCCTAACTGCTAG

Protein

MYSVCDVVRDAVAQSHLCACPNDKLPQCKGVTKAPPECSVFHVAKLQDTKFKWKYTLDPLKAQKLSQINKDIEKDAITLKLLYGIELSPEDLEWWKMQRCLINKKTGAKGGQFANKYLERQDLELLGYSPTPIIGGDFMFTALPDKVLRTIPIAWDRFLNPAMMIFFLIILLCVILGIFYVLVRNTLRRKQKIKQHQMEIKRFIKEKEQDPYIHTSFESWPADPNKEWKELIPVYEAQGYCMADYRKKLGMPPGPNC

Similarity

Belongs to the asfivirus C257R family.

Keywords

Complete proteome Host membrane Membrane Reference proteome Transmembrane Transmembrane helix

Feature

chain Transmembrane protein C257L

Uniprot

A9JL17 D4I5Q4 A9JLU1 A0A0A1E3K0 Q65158 E0WMK4 + More
A0A2X0RVE2 P0CAC0 P0CAB9 P0CAB8 A0A0C5B014 A0A0C5AZF6 P0CAB7

Pubmed

18198370 25406173 26618713 11831707 21470447 25645905 + More

EMBL

AM712239 CAN10166.1 FN557520 CBH29167.1 AM712240 CAN10414.1 + More
KM262844 KM262845 KM102979 KP055815 KX354450 AIY22258.1 AIY22416.1 AJZ77116.1 AKO62748.1 AOO54400.1 U18466 FR682468 CBW46732.1 MG939583 MG939587 MG939588 LS478113 AXZ95841.1 AXZ96029.1 AXZ96124.1 SPS73489.1 AY261366 AY261363 AY261361 KM111295 MH025916 MH025917 MH025918 MH025919 MH025920 AJL34245.1 AXB49295.1 AXB49469.1 AXB49641.1 AXB49812.1 AXB49985.1 KM111294 AJL34080.1 AY261360

Proteomes

UP000130745 UP000101090 UP000108903 UP000110401 UP000117635 UP000142390 + More
UP000241813 UP000266411 UP000000624 UP000141072 UP000000858 UP000000859 UP000000860 UP000101566 UP000105860 UP000000861

PRIDE

Q65158 P0CAC0 P0CAB9 P0CAB8 P0CAB7

ProteinModelPortal

A9JL17 D4I5Q4 A9JLU1 A0A0A1E3K0 Q65158 E0WMK4 + More
A0A2X0RVE2 P0CAC0 P0CAB9 P0CAB8 A0A0C5B014 A0A0C5AZF6 P0CAB7

PDB

2W6D E-value=3.36688, Score=68

Ontologies

KEGG

vg:22220296

GO

GO:0016021 C:integral component of membrane
GO:0033644 C:host cell membrane

Subcellular Location

From MSLVP

Multi-Pass Membrane

From Uniprot

Host membrane

Topology

Length:

257

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

29.60587

Exp number, first 60 AAs:

0

Total prob of N-in:

0.39082

outside

1 - 160

TMhelix

161 - 183

inside

184 - 257

Population Genetic Test Statistics

Pi

0.0373687

Theta

0.0455117

Tajima's D

-0.6492724

CLR

0

Interpretation

No evidence of Selection

Multiple alignment of Orthologues

Gene Tree

Orthologous in Strains

Strain	Status	Gene
Spain_BA71_1971	Protein	AKO62748.1
China_AnhuiXCGQ_2018	Protein	AYW34037.1
China_ASFV-SY18_2018	Genetic Remain	AKO62748.1
Poland_Pol16_20186_o7_2016-2017	Protein	AXZ95841.1
Poland_Pol16_20538_o9_2016-2017	Genetic Remain	CAN10166.1
Poland_Pol16_20540_o10_2016-2017	Genetic Remain	CAN10166.1
Poland_Pol16_29413_o23_2016-2017	Genetic Remain	CAN10166.1
Poland_Pol17_03029_C201_2016-2017	Protein	AXZ96029.1
Poland_Pol17_04461_C210_2016-2017	Protein	AXZ96124.1
Poland_Pol17_05838_C220_2016-2017	Genetic Remain	CAN10166.1
Poland_ASFV_POL_Podlaskie_2015	Genetic Remain	CAN10166.1
Uganda_R8_2015	Protein	AXB49295.1
Uganda_R7_2015	Protein	AXB49469.1
Uganda_R25_2015	Protein	AXB49641.1
Uganda_N10_2015	Protein	AXB49812.1
Uganda_R35_2015	Protein	AXB49985.1
Estonia_2014	Protein	SPS73489.1
Italy_26544_OG10_2010	Protein	AJZ77116.1
Italy_47_Ss_2008_2008	Protein	AOO54400.1
Portugal_OURT_88.3_1988	Protein	CAN10414.1
Spain_E75_1975	Protein	CBH29167.1
Russia_Georgia_2007	Protein	CBW46732.1
Kenya_Tk1_2005	Protein	AJL34080.1
Kenya_Bus_2006	Protein	AJL34245.1
Russia_Odintsovo_2014	Genetic Remain	CAN10166.1
Portugal_L60_1960	Protein	AIY22258.1
Portugal_NHV_1968	Protein	AIY22416.1
Russia_Kashino_2013	Genetic Remain	CAN10166.1
Benin_1997	Protein Protein	CAN10166.1 CAN10166.1
South_Africa_KNP_Pretorisuskop_1996	Protein	CAN10166.1
South_Africa_MGR_Mkuzi_1979	Protein	CAN10166.1
Malawi_Lil_1983	Protein	CAN10166.1
Kenya_1950	Protein	CAN10166.1
Namibia_Warthog_1980	Protein	CAN10166.1
South_Africa_Warmbaths_1987	Protein	CAN10166.1
Malawi_Tengani_1962	Protein	CAN10166.1
China_HLJ_2018	Protein	QBH90554.1
China_LN_2018	Protein	QBH90739.1
China_wbBS01_2018	Protein	QDL88097.1
Ukraine_Kyiv_2014	Protein Protein	QED21636.1 QED21637.1
Belgium_Etalle_wb_2018	Protein	QED90509.1
Lithuania_LT14_2014	Protein	QEY87872.1
South_Africa_1985	Protein	CAN10166.1
South_Africa_2_2008	Protein	CAN10166.1
Zambia_LIV_1983	Protein	CAN10166.1

Sequence