Strain
South_Africa_Warmbaths_1987
(Region: South Africa, Warmbaths; Strain: Warmbaths; Date: 1987)
Gene
hypothetical protein AFSV47Ss_0086
Description
With frameshift mutation but translatable,
hypothetical protein
Location
GenBank Accession
Sequence
CDS
ATGAAGAAGAATGTCAGCATGATGATGACACCACTTCCATACATGAACCATCCCCCAGAGAACCATTACTTCCTAAACCTTACAGTCGTTATCAGTATAATACACCTATTTACTACATGCGTCCCTCAACACAACCACTCAACCCATTTCCCCTACCTAAACCATGCCCACCACCTAAACCGTGTCCGCCACCCAAACCATGTCCTCCACCCAAACCATGCCCGCCACCCAAACCATGCCCGCCACCTAAACCATGTCCTCCACCTGAATCATGTTCTTCACCTGAATCATGTTCTTCACCTGAATCATATTCTCCACCCAAACCACTACCTAGTATCCCGCTGCTACCCAATATCCCGCCATTATCTACACAAAATATTTCGCTTATTCATGTAG
Protein
MKKNVSMMMTPLPYMNHPPENHYFLNLTVVISIIHLFTTCVPQHNHSTHFPYLNHAHHLNRVRHPNHVLHPNHARHPNHARHLNHVLHLNHVLHLNHVLHLNHILHPNHYLVSRCYPISRHYLHKIFRLFMX
Summary
Uniprot
Pubmed
Proteomes
ProteinModelPortal
PDB
6ID1
E-value=3.62085,
Score=63
Ontologies
Subcellular Location
From MSLVP
Others-Single
Topology
Length:
132
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
10.57482
Exp number, first 60 AAs:
10.50539
Total prob of N-in:
0.69571
POSSIBLE N-term signal
sequence
inside
1 - 132
Population Genetic Test Statistics
Pi
0.0584786
Theta
0.0752681
Tajima's D
-0.7968433
CLR
15.798913
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 |
Protein |
AOO54391.1 |
|
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 |
Protein |
AOO54391.1 |
|
| Italy_47_Ss_2008_2008 |
Protein |
AOO54391.1 |
|
| Portugal_OURT_88.3_1988 |
Protein |
AOO54391.1 |
|
| Spain_E75_1975 |
Protein |
AOO54391.1 |
|
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 |
Protein |
AOO54391.1 |
|
| Portugal_NHV_1968 |
Protein |
AOO54391.1 |
|
| Russia_Kashino_2013 | |||
| Benin_1997 |
Protein |
AOO54391.1 |
|
| South_Africa_KNP_Pretorisuskop_1996 |
Protein |
AOO54391.1 |
|
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 |
Protein |
AOO54391.1 |
|
| South_Africa_Warmbaths_1987 |
Protein |
AOO54391.1 |
|
| Malawi_Tengani_1962 |
Protein |
AOO54391.1 |
|
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 | |||
| South_Africa_2_2008 | |||
| Zambia_LIV_1983 |
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zhuzl@cqu.edu.cn,
mg@cau.edu.cn
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