Strain
South_Africa_KNP_Pretorisuskop_1996
(Region: South Africa, Kruger National Park; Strain: Pretorisuskop/96/4; Date: 1996)
Gene
hypothetical protein ASFV_Kyiv_2016_131_00237
Description
With frameshift mutation but translatable,
hypothetical protein
Location
GenBank Accession
Sequence
CDS
ATGTTTTATCCTGTTGTTCAAATACTTATAGGGATTATTCTTGTGATTATTTTAATACTGGGCTTTTACCATCTAAAACGGAAACCGCCGAAAAAAAAATGTAAGACAGATACGGATTGTAAGGATAAAGGACATCACTGTGTACGTGGAGCATGTACTGATAAAAGTTGTCTA
Protein
MFYPVVQILIGIILVIILILGFYHLKRKPPKKKCKTDTDCKDKGHHCVRGACTDKSCL
Summary
Uniprot
EMBL
Proteomes
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
58
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
20.86717
Exp number, first 60 AAs:
20.86717
Total prob of N-in:
0.02030
POSSIBLE N-term signal
sequence
outside
1 - 4
TMhelix
5 - 25
inside
26 - 58
Population Genetic Test Statistics
Pi
0.0521531
Theta
0.0718333
Tajima's D
-0.971883
CLR
0.229641
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 |
Protein Protein |
QED21773.1 AKO62833.1 |
|
| China_AnhuiXCGQ_2018 |
Protein Protein |
QED21773.1 AYW34123.1 |
|
| China_ASFV-SY18_2018 |
Protein |
AKO62833.1 |
|
| Poland_Pol16_20186_o7_2016-2017 |
Protein Protein |
QED21773.1 AXZ95923.1 |
|
| Poland_Pol16_20538_o9_2016-2017 |
Protein |
QED21773.1 |
|
| Poland_Pol16_20540_o10_2016-2017 |
Protein |
QED21773.1 |
|
| Poland_Pol16_29413_o23_2016-2017 |
Protein |
QED21773.1 |
|
| Poland_Pol17_03029_C201_2016-2017 |
Protein |
QED21773.1 |
|
| Poland_Pol17_04461_C210_2016-2017 |
Protein Protein |
QED21773.1 AXZ96206.1 |
|
| Poland_Pol17_05838_C220_2016-2017 |
Protein |
QED21773.1 |
|
| Poland_ASFV_POL_Podlaskie_2015 |
Protein |
QED21773.1 |
|
| Uganda_R8_2015 |
Protein |
AXB49380.1 |
|
| Uganda_R7_2015 |
Protein |
AXB49554.1 |
|
| Uganda_R25_2015 |
Protein |
AXB49726.1 |
|
| Uganda_N10_2015 |
Protein |
AXB49897.1 |
|
| Uganda_R35_2015 |
Protein |
AXB50070.1 |
|
| Estonia_2014 |
Protein Protein |
QED21773.1 SPS73576.1 |
|
| Italy_26544_OG10_2010 |
Protein Protein |
QED21773.1 AJZ77146.1 |
|
| Italy_47_Ss_2008_2008 |
Protein Protein |
QED21773.1 AOO54528.1 |
|
| Portugal_OURT_88.3_1988 |
Protein Protein |
QED21773.1 CAN10501.1 |
|
| Spain_E75_1975 |
Protein Protein |
QED21773.1 CBH29253.1 |
|
| Russia_Georgia_2007 |
Protein Protein |
QED21773.1 CBW46820.1 |
|
| Kenya_Tk1_2005 |
Protein |
AJL34164.1 |
|
| Kenya_Bus_2006 |
Protein Protein |
AJL34328.1 AJL34328.1 |
|
| Russia_Odintsovo_2014 |
Protein |
QED21773.1 |
|
| Portugal_L60_1960 |
Protein Protein |
QED21773.1 AIY22343.1 |
|
| Portugal_NHV_1968 |
Protein Protein |
QED21773.1 AIY22501.1 |
|
| Russia_Kashino_2013 |
Protein |
QED21773.1 |
|
| Benin_1997 |
Protein Protein |
QED21773.1 CAN10251.1 |
|
| South_Africa_KNP_Pretorisuskop_1996 |
Protein |
QED21773.1 |
|
| South_Africa_MGR_Mkuzi_1979 |
Protein |
QED21773.1 |
|
| Malawi_Lil_1983 |
Protein |
AJL34328.1 |
|
| Kenya_1950 | |||
| Namibia_Warthog_1980 |
Protein |
QED21773.1 |
|
| South_Africa_Warmbaths_1987 |
Protein |
QED21773.1 |
|
| Malawi_Tengani_1962 |
Genetic Remain Protein |
AJL34328.1 QED21773.1 |
|
| China_HLJ_2018 |
Protein Protein |
QED21773.1 QBH90641.1 |
|
| China_LN_2018 |
Protein Protein |
QED21773.1 QBH90826.1 |
|
| China_wbBS01_2018 |
Protein Protein |
QED21773.1 QDL88184.1 |
|
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 |
Protein Protein |
QED21773.1 QED90596.1 |
|
| Lithuania_LT14_2014 |
Protein Protein |
QED21773.1 QEY87958.1 |
|
| South_Africa_1985 | |||
| South_Africa_2_2008 | |||
| Zambia_LIV_1983 |
