ASFVdb The African Swine Fever Virus Database
Strain
Malawi_Lil_1983 (Region: Malawi, Chalaswa;  Strain: Malawi Lil-20/1 (1983);  Date: 1983)
Gene
pB602L
Description
With frameshift mutation but translatable,  Putative product contains tandem repeats
GenBank Accession
Full name
Protein B602L      
 

Sequence

CDS
ATGGCAGAATTTAATATTGATGAGCTTCTCAAAAACGTATTGGAGGACCCCTCTACTGAAATATCTGAAGAAACGCTTAAACAGCTTTATCAAAGGACGAACCCCTATAAACAGTTCAAAAATGATAGCAGGGTGGCCTTTTGCTCCTTTACAAATTTGCGGGAGCAGTATATTCGACGTCTTATAATGACTAGTCTTATTGGATATGTCTTCAAAGCTCTGCAGGAATGGATGCCCTCCTATTCAAAACCCACCCACACGACCAAAACTCTTCTCAGTGAGCTAATAACATTAGTTGATACTTTGAAACAGGAAACTAATGATGTTCCCTCTGAATCAGTAGTAAATACAATTTTAGCTATAGCGGACAGCTGCAAAACCCAAACGCAGAAAAGCAAGGAAGCTAAAACAACGATCGACAGCTTTTTACGAGAACATTTTGTGTTTGATCCTAATCTTCATGCTCAAAGTGCGTATACCTGTGCAAGCACCAATGCAGACACAAGTGCAAGCACCAATGCAGACACAAGTGCAAGCACCAATGCAAGCATAAATGCAGATACCAATGTAGATACTTGTGCAAGCACCAATGCAAGCACAAATGTAGACACCAATGCAAGCATAAATGCAAGCACCAATGCAAGCACAAATGTAGACACCAATGCAAGCACCAATGCAAGCATAAATGCAGATACCAATGTAGATACTTGTGCAAGCACCAATGCAAGCACAAATGTAGACACCAATGCAAGCATAAATGCAAGCACCAATGCAAGCACAAATGTAGACACCAATGCAGACATCAATGCAAACACCAATGCAGACATCAATGCAAACATCAATGCAAACACAGAATACACCGATTTAACAGATCCTGAGCGCATTCCTTTACACATCATGCAAAAAACATTAAATGTGCCTAATGAGCTTCAGGCCGATATTGATGCAATCACCCAAACTCCACAGGGTTATAGGGCAGCAGCCCACATATTACAAAATATAGAACTTCACCAAAGCGTTAAACATATGCTTGAAAATCCAAGAGCATTTAAACCCATTCTCTTTAATACAAAAATTACTAGATATCTTTCGCAGCACATTCCACCTCAGGATACGTTTTATAAGTGGAATTATTACATTGAGGATAATTACGAAGAGTTGCGGGCCGCTACGGAAAGCATCTACCCAGAAAAACCCGACCTAGAGTTTGCCTTTATTATTTATGATGTGGTGGATAGCAGCAACCAACAAAAGATTGATGAATTTTATTATAAATATAAGGACCAAATTTTCTCAGAGGTTTCATCCATTCAATTAGGCAACTGGACACTCCTGGGAAGCTTTAAGGCCAACAGAGAGCGCTACAACTATTTTAATCAAAATAATGAAGTAATAAAACGAATTTTGGACCGTCATGAGGAAGATCTAAAGATAGGAAAAGAGATTTTACGAAATACCATTTATCACAAAAAAGCAAAAAATATACAAGAAACCGGCCCGGATGCTCCAGGGCTCTCCATCTATAATTCAACCTTTCACACGGACAGCGGGATTAAAGGACTGCTTTCCTTTAAGGAGCTAAAAAATCTAGAAAAAGCATCTGGAAATGTCAAAAAAGCTCGAGAGTATGATTTTATAGATGAATGCGAAGAAAAAATTAAGCAACTGCTTAGTAAAGAAAATTTAACCTCCGATGAAAAAAGCGAGCTGATAAAAACAAAAAAACAGTTGGATAATGCGCTTGAAATGCTCAATGTGCCTGATGATACGATACGGGTAGATATGTGGGTCAACAATAATAACAAACTCGAAAAAGAAATTTTATATACAAAAGCAGAATTGTAA
Protein
MAEFNIDELLKNVLEDPSTEISEETLKQLYQRTNPYKQFKNDSRVAFCSFTNLREQYIRRLIMTSLIGYVFKALQEWMPSYSKPTHTTKTLLSELITLVDTLKQETNDVPSESVVNTILAIADSCKTQTQKSKEAKTTIDSFLREHFVFDPNLHAQSAYTCASTNADTSASTNADTSASTNASINADTNVDTCASTNASTNVDTNASINASTNASTNVDTNASTNASINADTNVDTCASTNASTNVDTNASINASTNASTNVDTNADINANTNADINANINANTEYTDLTDPERIPLHIMQKTLNVPNELQADIDAITQTPQGYRAAAHILQNIELHQSVKHMLENPRAFKPILFNTKITRYLSQHIPPQDTFYKWNYYIEDNYEELRAATESIYPEKPDLEFAFIIYDVVDSSNQQKIDEFYYKYKDQIFSEVSSIQLGNWTLLGSFKANRERYNYFNQNNEVIKRILDRHEEDLKIGKEILRNTIYHKKAKNIQETGPDAPGLSIYNSTFHTDSGIKGLLSFKELKNLEKASGNVKKAREYDFIDECEEKIKQLLSKENLTSDEKSELIKTKKQLDNALEMLNVPDDTIRVDMWVNNNNKLEKEILYTKAEL

Summary

Function
Plays an essential role in the assembly of the icosahedral capsid of the virus.
Similarity
Belongs to the asfivirus B602L family.
Keywords
Complete proteome   Host cytoplasm   Reference proteome   Repeat  
Feature
chain  Protein B602L
PDB
1RI8     E-value=4.52051,     Score=71

Ontologies

KEGG

Subcellular Location

From MSLVP
Capsid
From Uniprot
Host cytoplasm  

Topology

Length:
614
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03389
Exp number, first 60 AAs:
0.00449
Total prob of N-in:
0.00176
outside
1  -  614
 
 

Population Genetic Test Statistics

Pi
0.0300769
Theta
0.0398217
Tajima's D
-0.9021505
CLR
0.308399
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983 Protein
Protein
CAN10429.1
QED21663.1
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983    
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