Strain
Malawi_Lil_1983
(Region: Malawi, Chalaswa; Strain: Malawi Lil-20/1 (1983); Date: 1983)
Gene
hypothetical protein AFSV47Ss_0182
Description
With frameshift mutation but translatable,
hypothetical protein
Location
GenBank Accession
Sequence
CDS
ATGATACATGGCATTTTCAGTATATTCAATAAGCTTAATAACTCCGGGAGTATCTTGCAGGGCTTTCATCACGACGACCTCATTTCCTGGAATTTCTTTTTTAGATACATACTTAAAAACAACTGGTTGCCCTACTTGATGACCCAAAAATACGTTATTTCTTCTACCACCCTCAAACATAGGTTTCGTTGCAATGAAGTACATGTGCTCCGTTGTGGAGATCCTTTCCACCTTTATTGTAGGATAAACTGCATATTGTGCCTGAGGGTTTTTTAA
Protein
MIHGIFSIFNKLNNSGSILQGFHHDDLISWNFFFRYILKNNWLPYLMTQKYVISSTTLKHRFRCNEVHVLRCGDPFHLYCRINCILCLRVF
Summary
Uniprot
Pubmed
Proteomes
ProteinModelPortal
PDB
6RAZ
E-value=2.34189,
Score=64
Ontologies
Subcellular Location
From MSLVP
Host nucleus. Host cytoplasm.
Topology
Length:
91
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0783700000000001
Exp number, first 60 AAs:
0.07784
Total prob of N-in:
0.08471
outside
1 - 91
Population Genetic Test Statistics
Pi
0.0439821
Theta
0.046917
Tajima's D
-0.2171472
CLR
0
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 |
Protein |
AOO54487.1 |
|
| China_AnhuiXCGQ_2018 |
Protein |
AOO54487.1 |
|
| China_ASFV-SY18_2018 |
Protein |
AOO54487.1 |
|
| Poland_Pol16_20186_o7_2016-2017 |
Protein |
AOO54487.1 |
|
| Poland_Pol16_20538_o9_2016-2017 |
Protein |
AOO54487.1 |
|
| Poland_Pol16_20540_o10_2016-2017 |
Protein |
AOO54487.1 |
|
| Poland_Pol16_29413_o23_2016-2017 |
Protein |
AOO54487.1 |
|
| Poland_Pol17_03029_C201_2016-2017 |
Protein |
AOO54487.1 |
|
| Poland_Pol17_04461_C210_2016-2017 |
Protein |
AOO54487.1 |
|
| Poland_Pol17_05838_C220_2016-2017 |
Protein |
AOO54487.1 |
|
| Poland_ASFV_POL_Podlaskie_2015 |
Protein |
AOO54487.1 |
|
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 |
Protein |
AOO54487.1 |
|
| Italy_26544_OG10_2010 |
Protein |
AOO54487.1 |
|
| Italy_47_Ss_2008_2008 |
Protein |
AOO54487.1 |
|
| Portugal_OURT_88.3_1988 |
Protein |
AOO54487.1 |
|
| Spain_E75_1975 |
Protein |
AOO54487.1 |
|
| Russia_Georgia_2007 |
Protein |
AOO54487.1 |
|
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 |
Protein |
AOO54487.1 |
|
| Portugal_L60_1960 |
Protein |
AOO54487.1 |
|
| Portugal_NHV_1968 |
Protein |
AOO54487.1 |
|
| Russia_Kashino_2013 |
Protein |
AOO54487.1 |
|
| Benin_1997 |
Protein |
AOO54487.1 |
|
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 |
Protein |
AOO54487.1 |
|
| Malawi_Lil_1983 |
Protein |
AOO54487.1 |
|
| Kenya_1950 | |||
| Namibia_Warthog_1980 |
Protein |
AOO54487.1 |
|
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 |
Protein |
AOO54487.1 |
|
| China_LN_2018 |
Protein |
AOO54487.1 |
|
| China_wbBS01_2018 |
Protein |
AOO54487.1 |
|
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 |
Protein |
AOO54487.1 |
|
| Lithuania_LT14_2014 |
Protein |
AOO54487.1 |
|
| South_Africa_1985 | |||
| South_Africa_2_2008 | |||
| Zambia_LIV_1983 |
Protein |
AOO54487.1 |
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mg@cau.edu.cn
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