ASFVdb The African Swine Fever Virus Database
Strain
Kenya_1950 (Region: Kenya ;  Strain: Kenya 1950;  Date: 1950)
Gene
pC147L
Description
With frameshift mutation but translatable,  pC147L
GenBank Accession
 

Sequence

CDS
ATGCAGCGCATAACGAGCAGTGGAATTTTCCTGTTAAAGAGTTCTTGCTTAGCTATATCAATAGGACTGCTATATTTTTTTTTAAGCATTGTAGATCCATTGATTGCCAATTGTTGTGCTCTAACGGCGACCAACCTTGTGGCTTCAAAGGTCGTTAAAACGTTGGAGGTAATGCGCTCGTTATCGGGTATAACGACCAATGTTTGCGACGAGGCCTGCACAAAGCCCTCACAGATGGACGGAGATTCCACGATCTCGTCCTTGTCTTCGGACTCCTCCTCACTGTCGACGAAATTCTCCTCCTCCGTTTCCACATATTCCTCCACGAGGTCATCCATGATACTATCCTCATTGTCATTATCAGCCATATTACACTGTTATCAAATGTACTGTTTAATACGTAAATGGATATACTACGTTTTAATTGTATGTCTTCAT
Protein
MQRITSSGIFLLKSSCLAISIGLLYFFLSIVDPLIANCCALTATNLVASKVVKTLEVMRSLSGITTNVCDEACTKPSQMDGDSTISSLSSDSSSLSTKFSSSVSTYSSTRSSMILSSLSLSAILHCYQMYCLIRKWIYYVLIVCLH

Summary

Uniprot
ProteinModelPortal

Ontologies

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
146
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
32.56589
Exp number, first 60 AAs:
23.39066
Total prob of N-in:
0.96151
POSSIBLE N-term signal
sequence
inside
1  -  8
TMhelix
9  -  31
outside
32  -  146
 
 

Population Genetic Test Statistics

Pi
0.0259443
Theta
0.0341338
Tajima's D
-0.7337656
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
Protein
AOO54404.1
QGM12727.1
China_AnhuiXCGQ_2018 Protein
Protein
AOO54404.1
QGM12727.1
China_ASFV-SY18_2018 Protein
Protein
AOO54404.1
AOO54405.1
Poland_Pol16_20186_o7_2016-2017 Protein
Protein
AOO54404.1
QGM12727.1
Poland_Pol16_20538_o9_2016-2017 Protein
Protein
AOO54404.1
QGM12727.1
Poland_Pol16_20540_o10_2016-2017 Protein
Protein
AOO54404.1
QGM12727.1
Poland_Pol16_29413_o23_2016-2017 Protein
Protein
AOO54404.1
QGM12727.1
Poland_Pol17_03029_C201_2016-2017 Protein
Protein
AOO54404.1
QGM12727.1
Poland_Pol17_04461_C210_2016-2017 Protein
Protein
AOO54404.1
QGM12727.1
Poland_Pol17_05838_C220_2016-2017 Protein
Protein
AOO54404.1
QGM12727.1
Poland_ASFV_POL_Podlaskie_2015 Protein
Protein
AOO54404.1
QGM12727.1
Uganda_R8_2015 Protein
Protein
Protein
AOO54404.1
QGM12727.1
AXB49299.1
Uganda_R7_2015 Protein
Protein
Protein
AOO54404.1
QGM12727.1
AXB49473.1
Uganda_R25_2015 Protein
Protein
Protein
AOO54404.1
QGM12727.1
AXB49645.1
Uganda_N10_2015 Protein
Protein
Protein
AOO54404.1
QGM12727.1
AXB49816.1
Uganda_R35_2015 Protein
Protein
Protein
AOO54404.1
QGM12727.1
AXB49989.1
Estonia_2014 Protein
Protein
AOO54404.1
QGM12727.1
Italy_26544_OG10_2010 Protein
Protein
AOO54404.1
QGM12727.1
Italy_47_Ss_2008_2008 Protein
Protein
Protein
QGM12727.1
AOO54404.1
AOO54405.1
Portugal_OURT_88.3_1988 Protein
Protein
AOO54404.1
QGM12727.1
Spain_E75_1975 Protein
Protein
AOO54404.1
QGM12727.1
Russia_Georgia_2007 Protein
Protein
AOO54404.1
QGM12727.1
Kenya_Tk1_2005 Protein
Protein
AOO54404.1
QGM12727.1
Kenya_Bus_2006 Protein
Protein
AOO54404.1
QGM12727.1
Russia_Odintsovo_2014 Protein
Protein
AOO54404.1
QGM12727.1
Portugal_L60_1960 Protein
Protein
AOO54404.1
QGM12727.1
Portugal_NHV_1968 Protein
Protein
AOO54404.1
QGM12727.1
Russia_Kashino_2013 Protein
Protein
AOO54404.1
QGM12727.1
Benin_1997 Protein
Protein
AOO54404.1
QGM12727.1
South_Africa_KNP_Pretorisuskop_1996 Protein
Protein
AOO54404.1
QGM12727.1
South_Africa_MGR_Mkuzi_1979 Protein
Protein
AOO54404.1
QGM12727.1
Malawi_Lil_1983 Protein
AOO54404.1
Kenya_1950 Protein
Protein
AOO54404.1
QGM12727.1
Namibia_Warthog_1980 Protein
Protein
AOO54404.1
QGM12727.1
South_Africa_Warmbaths_1987 Protein
Protein
AOO54404.1
QGM12727.1
Malawi_Tengani_1962 Protein
Protein
AOO54404.1
QGM12727.1
China_HLJ_2018 Protein
Protein
AOO54404.1
QGM12727.1
China_LN_2018 Protein
Protein
AOO54404.1
QGM12727.1
China_wbBS01_2018 Protein
Protein
AOO54404.1
QGM12727.1
Ukraine_Kyiv_2014 Protein
Protein
AOO54404.1
QED21642.1
Belgium_Etalle_wb_2018 Protein
Protein
AOO54404.1
QGM12727.1
Lithuania_LT14_2014 Protein
Protein
AOO54404.1
QGM12727.1
South_Africa_1985 Protein
AOO54404.1
South_Africa_2_2008 Protein
AOO54404.1
Zambia_LIV_1983 Protein
AOO54404.1
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