Strain
Portugal_OURT_88.3_1988
(Region: Portugal; Strain: OURT 88/3; Date: 1988)
Gene
pL60L
Description
Annotated in NCBI,
VOCs Family: Unkown (Pretorisuskop-L60L)
Location
GenBank Accession
Sequence
CDS
ATGGATGATACTCTTCCTAAACAGATGACTCCAACAGACACTTCCCCGTTAAAGGAGGAGCAGGCTCATTGCAACAATAAAACATTGGAAAATCAGCCTAAAAATATTAATGATAATAAATGTACTGATTCACAAAATACCGATTTACAGAATACTGAATCACAAAATACCGATTTACAGAATACTGAACCATCAAAAGTATAG
Protein
MDDTLPKQMTPTDTSPLKEEQAHCNNKTLENQPKNINDNKCTDSQNTDLQNTESQNTDLQNTEPSKV
Summary
Uniprot
EMBL
Proteomes
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.
Topology
Length:
67
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.42198
outside
1 - 67
Population Genetic Test Statistics
Pi
0.0757524
Theta
0.1005007
Tajima's D
-0.582259
CLR
3.502645
Interpretation
No evidence of Selection
Genomic alignment in the CDS region
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 |
Protein |
AKO62688.1 |
|
| China_AnhuiXCGQ_2018 |
Protein |
AYW33975.1 |
|
| China_ASFV-SY18_2018 |
Protein |
AKO62688.1 |
|
| Poland_Pol16_20186_o7_2016-2017 |
Protein |
AXZ95772.1 |
|
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 |
Protein |
AXZ95952.1 |
|
| Poland_Pol17_03029_C201_2016-2017 |
Protein |
AXZ95969.1 |
|
| Poland_Pol17_04461_C210_2016-2017 |
Protein |
AXZ96064.1 |
|
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 |
Protein |
AXB49224.1 |
|
| Uganda_R7_2015 |
Protein |
AXB49397.1 |
|
| Uganda_R25_2015 |
Protein |
AXB49571.1 |
|
| Uganda_N10_2015 |
Protein |
AXB49743.1 |
|
| Uganda_R35_2015 |
Protein |
AXB49914.1 |
|
| Estonia_2014 | |||
| Italy_26544_OG10_2010 |
Protein |
AJZ77189.1 |
|
| Italy_47_Ss_2008_2008 |
Protein |
AOO54313.1 |
|
| Portugal_OURT_88.3_1988 |
Protein |
CAN10354.1 |
|
| Spain_E75_1975 |
Protein |
CBH29103.1 |
|
| Russia_Georgia_2007 |
Protein |
CBW46647.1 |
|
| Kenya_Tk1_2005 |
Protein Protein |
AJL34010.1 AJL34010.1 |
|
| Kenya_Bus_2006 |
Protein Protein |
AJL34175.1 AJL34175.1 |
|
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 |
Protein |
AIY22193.1 |
|
| Portugal_NHV_1968 |
Protein |
AIY22356.1 |
|
| Russia_Kashino_2013 | |||
| Benin_1997 |
Protein |
CAN10102.1 |
|
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 |
Protein |
AJL34010.1 |
|
| Kenya_1950 |
Genetic Remain |
AJL34175.1 |
|
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 |
Protein |
QBH90470.1 |
|
| China_LN_2018 |
Protein |
QBH90655.1 |
|
| China_wbBS01_2018 |
Protein |
QDL88014.1 |
|
| Ukraine_Kyiv_2014 |
Protein |
QED21544.1 |
|
| Belgium_Etalle_wb_2018 |
Protein |
QED90428.1 |
|
| Lithuania_LT14_2014 |
Protein |
QEY87787.1 |
|
| South_Africa_1985 | |||
| South_Africa_2_2008 | |||
| Zambia_LIV_1983 |
