Strain
South_Africa_1985
(Region: South Africa; Strain: SPEC_57; Date: 1985)
Gene
pEP402R
Description
Annotated in NCBI,
EP402R
Location
GenBank Accession
Sequence
CDS
ATGATATTACTTATTTTTTTATTATTTTCTATCATACTTTTATGTATTGTTTATTGGGTTACTTTTATTACAACAATATTTTTACATACTATTATTACTATTGTTATTATTGTTATATATGGAGTATCATGGAATTTTTTTAATATTTCTTTTATTACACTACCTACATGTGGAAAAGCAGGTATCTTTTGTGTATGTTCTATTTATACTACATCAATATATATTATATCAAATATTTGTACCTTATCTATTTTTCCTCATATTGTTGTATTTGTTACAACATATCAAGTACTATGGAATCAAATATTTATTTATACAATACAATTATTATCACCTGTTACTCCCCCAAATATTACATATATTTGTACTATTTTTTTATTATCATGTACAAAAAATATTGGAACAAACACTATTATATATTTATATATATATGTTACTTTTGTTATATATACTATTGCAAGTATACTTGTATATATCTGGAATATTACTATCATTATCAATTTTACAGCTACATGTATATTTATTATTACAATTACTACATCTATTGCAACAACACTTATATATTGTACTTATTTATCATTGTCATCTATCTATTTTTATACTTTTTTTATATTATATTATATTCCATTATGCATCATATTTGGGATATCAATATGTATTCTTCTTATATCCATCATATCTTTTTTATCTTTACGAAAAAGAAAAAAACATGTTGCAGAAATACAAAGTCCACCACTATCTGTATCTATTGCAGAAGAACAATGTCAGCATGTTGTCACCACTTCTATACATGTACCGTCTCCCAGAGAACCATTACTTCCTATGCCTTACAGTCGTTATCAGTATATTACACCTATTTACTACATGCGCCCCTCAACACAACCACTCAACCCATTTCCCCTACCTATACCGTGTCCTCCACCTATACCGTGTCCGCCACCCAAACCATGTCCTCCACCTATACCATGTCCTTCACCTGTATCATATTCTCCACCCAAACCACTACCTACTATCCCGCTGCTACCCAATATCCCGCCATTATCTACACAAAATATTTCGCTTATTCATGTACATACAATTATTTAA
Protein
MILLIFLLFSIILLCIVYWVTFITTIFLHTIITIVIIVIYGVSWNFFNISFITLPTCGKAGIFCVCSIYTTSIYIISNICTLSIFPHIVVFVTTYQVLWNQIFIYTIQLLSPVTPPNITYICTIFLLSCTKNIGTNTIIYLYIYVTFVIYTIASILVYIWNITIIINFTATCIFIITITTSIATTLIYCTYLSLSSIYFYTFFILYYIPLCIIFGISICILLISIISFLSLRKRKKHVAEIQSPPLSVSIAEEQCQHVVTTSIHVPSPREPLLPMPYSRYQYITPIYYMRPSTQPLNPFPLPIPCPPPIPCPPPKPCPPPIPCPSPVSYSPPKPLPTIPLLPNIPPLSTQNISLIHVHTIIX
Summary
Uniprot
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
362
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
161.32427
Exp number, first 60 AAs:
44.52673
Total prob of N-in:
0.94634
POSSIBLE N-term signal
sequence
Length:
361
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
161.3178
Exp number, first 60 AAs:
44.52735
Total prob of N-in:
0.94624
POSSIBLE N-term signal
sequence
inside
1 - 4
TMhelix
5 - 27
outside
28 - 30
TMhelix
31 - 53
inside
54 - 72
TMhelix
73 - 95
outside
96 - 137
TMhelix
138 - 160
inside
161 - 171
TMhelix
172 - 194
outside
195 - 203
TMhelix
204 - 226
inside
227 - 362
inside
1 - 4
TMhelix
5 - 27
outside
28 - 30
TMhelix
31 - 53
inside
54 - 72
TMhelix
73 - 95
outside
96 - 137
TMhelix
138 - 160
inside
161 - 171
TMhelix
172 - 194
outside
195 - 203
TMhelix
204 - 226
inside
227 - 361
Population Genetic Test Statistics
Pi
0.1551573
Theta
0.2064069
Tajima's D
-1.0207954
CLR
1.47268
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 |
Protein |
AYW34030.1 |
|
| China_ASFV-SY18_2018 |
Protein |
CBW46724.1 |
|
| Poland_Pol16_20186_o7_2016-2017 |
Protein |
AXZ95833.1 |
|
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 |
Protein |
AXZ96021.1 |
|
| Poland_Pol17_04461_C210_2016-2017 |
Protein |
AXZ96116.1 |
|
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 |
Protein |
SPS73481.1 |
|
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 |
Protein |
CBW46724.1 |
|
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 |
Protein |
QBH90546.1 |
|
| China_LN_2018 |
Protein |
QBH90731.1 |
|
| China_wbBS01_2018 |
Protein |
QDL88089.1 |
|
| Ukraine_Kyiv_2014 |
Protein |
QED21622.1 |
|
| Belgium_Etalle_wb_2018 |
Protein |
QED90501.1 |
|
| Lithuania_LT14_2014 |
Protein |
QEY87864.1 |
|
| South_Africa_1985 |
Protein Protein |
QGM12912.1 QGM12912.1 |
|
| South_Africa_2_2008 | |||
| Zambia_LIV_1983 |
