ASFVdb The African Swine Fever Virus Database
Strain
South_Africa_1985 (Region: South Africa;  Strain: SPEC_57;  Date: 1985)
Gene
pEP424R
Description
Annotated in NCBI,  EP424R
GenBank Accession
Full name
Probable methyltransferase EP424R      
 

Sequence

CDS
ATGTCCAATTACTATTATTACTATGGCGGGGGAAGATATGTTTGGTTACAAACAGTACAACCCACTATTTTTTTACAAATCGGGTTGCCTTATCAGGCACACCCATTACACCTCCAACATCAGGCAACTACTCCCCCATCTATCTTACAAAAATTTATACGAGCAGACATTCTTCTTATTGTGGTGCAGGCCGAAATGGATCCACTCATGTTACAACCAGAAACCGAAAAAAAATTATTCCAGATATTGTGTACTATTGTTATGTTCAAAGGTCTGCGAAAAAAAGTACAATTTACGTACAATGCTCAAATTGTTACGAATGCTTGGCTTACAATGTATGTGCTGCTACATACCATGTATTTTATTATTACATCTCAGGCATTTTGCAATTGTGTACTTCCAGGAGGGTTTATATGTGCAATTATCCATTTTATTTATACAATGTTGCATTACCCTACTTTTATCTGGGTACCCTCCTCCCTTTACCCCAGTTCGGAAACAGATGCCCTGGAAGATCACTATGGTCTTTATCAGTGCAATCCGGATATCTGGTTGTTGCAATCTCCTTTGCTGCAAAAAAATATGGATTATATTATTGGGGACGTGTCCATCGCTACCAATGTACAAAACCTGGCGCTTACAGCCACACAGAGGCTGTCGCCCATCCATCTATATACGGCTGTTGGAGGTATTATTGTACGACATGTCTACAATATACAAGAAGAATTATATCTTATGCTTCACTTTGGTCAAGCTCTTACAGGTTTGTTGTGTCTTACCAAAGGCGGAAACATGTTACTCAAACACTATACCTTATATCATGCATTTACTCTTTCTTTATTATGTGTATTTTCTCACTTTTTTGTGGAACTATACATTACCAAACCTACCTCCTCTCGGCCCACGAACTCTGCAACTTATATTGTGGGTACAAACAGATTACGCCTATTTACCCCCAAGGAAGAACAAGTTCTCCTGCAACGACTACAATTCTTTATTGTTACGCCCCTCGTACACCTATGTCTTTACCAAAATTTACTTGCAAGCATTTACTTTGCCGTACAAACAATACATCTACAACAACAAATACAATTTCTATACTTCGGAATGCAATGTTACCGACATTTTTATATCAAGATTATACTACTTATTGTTTATTTACCTCCGAAAAAAAAGATTTTTCAGGATACGTGGCGTGTGCTTATTATGCTTTATGTTCTTGCAAAAAAGCATATACTTATGCTTTGTGCTGCCTCCCAGGAATCTGTTGCCTAA
Protein
MSNYYYYYGGGRYVWLQTVQPTIFLQIGLPYQAHPLHLQHQATTPPSILQKFIRADILLIVVQAEMDPLMLQPETEKKLFQILCTIVMFKGLRKKVQFTYNAQIVTNAWLTMYVLLHTMYFIITSQAFCNCVLPGGFICAIIHFIYTMLHYPTFIWVPSSLYPSSETDALEDHYGLYQCNPDIWLLQSPLLQKNMDYIIGDVSIATNVQNLALTATQRLSPIHLYTAVGGIIVRHVYNIQEELYLMLHFGQALTGLLCLTKGGNMLLKHYTLYHAFTLSLLCVFSHFFVELYITKPTSSRPTNSATYIVGTNRLRLFTPKEEQVLLQRLQFFIVTPLVHLCLYQNLLASIYFAVQTIHLQQQIQFLYFGMQCYRHFYIKIILLIVYLPPKKKIFQDTWRVLIMLYVLAKKHILMLCAASQESVA

Summary

Keywords
Complete proteome   Methyltransferase   S-adenosyl-L-methionine   Transferase   Reference proteome  
Feature
chain  Probable methyltransferase EP424R
Pfam
PF01728   FtsJ
Interpro
IPR025807   Adrift-typ_MeTrfase
IPR002877   rRNA_MeTrfase_FtsJ_dom
IPR029063   SAM-dependent_MTases
SUPFAM
SSF53335   SSF53335
PDB
4N4A     E-value=9.68561e-10,     Score=153

Ontologies

KEGG

Subcellular Location

From MSLVP
Capsid

Topology

Length:
424
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
135.01135
Exp number, first 60 AAs:
4.78398
Total prob of N-in:
0.56581
inside
1  -  97
TMhelix
98  -  120
outside
121  -  123
TMhelix
124  -  146
inside
147  -  271
TMhelix
272  -  294
outside
295  -  330
TMhelix
331  -  353
inside
354  -  364
TMhelix
365  -  387
outside
388  -  396
TMhelix
397  -  419
inside
420  -  424
 
 

Population Genetic Test Statistics

Pi
0.0394995
Theta
0.0450934
Tajima's D
-0.3983735
CLR
0.333116
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
Protein
QED21617.1
AKO62737.1
China_AnhuiXCGQ_2018 Protein
Protein
QED21617.1
AYW34027.1
China_ASFV-SY18_2018 Protein
AKO62737.1
Poland_Pol16_20186_o7_2016-2017 Protein
Protein
QED21617.1
AXZ95830.1
Poland_Pol16_20538_o9_2016-2017 Protein
Protein
CAN10155.1
QED21617.1
Poland_Pol16_20540_o10_2016-2017 Protein
Protein
CAN10155.1
QED21617.1
Poland_Pol16_29413_o23_2016-2017 Protein
Protein
CAN10155.1
QED21617.1
Poland_Pol17_03029_C201_2016-2017 Protein
Protein
QED21617.1
AXZ96018.1
Poland_Pol17_04461_C210_2016-2017 Protein
Protein
QED21617.1
AXZ96113.1
Poland_Pol17_05838_C220_2016-2017 Protein
Protein
CAN10155.1
QED21617.1
Poland_ASFV_POL_Podlaskie_2015 Protein
Protein
CAN10155.1
QED21617.1
Uganda_R8_2015 Protein
Protein
QED21617.1
AXB49284.1
Uganda_R7_2015 Protein
Protein
QED21617.1
AXB49458.1
Uganda_R25_2015 Protein
Protein
QED21617.1
AXB49630.1
Uganda_N10_2015 Protein
Protein
QED21617.1
AXB49801.1
Uganda_R35_2015 Protein
Protein
QED21617.1
AXB49974.1
Estonia_2014 Protein
Protein
QED21617.1
SPS73478.1
Italy_26544_OG10_2010 Protein
Protein
QED21617.1
AJZ77071.1
Italy_47_Ss_2008_2008 Protein
Protein
QED21617.1
AOO54387.1
Portugal_OURT_88.3_1988 Protein
Protein
QED21617.1
CAN10403.1
Spain_E75_1975 Protein
Protein
QED21617.1
CBH29156.1
Russia_Georgia_2007 Protein
Protein
QED21617.1
CBW46721.1
Kenya_Tk1_2005 Protein
Protein
QED21617.1
AJL34069.1
Kenya_Bus_2006 Protein
Protein
QED21617.1
AJL34234.1
Russia_Odintsovo_2014 Protein
Protein
CAN10155.1
QED21617.1
Portugal_L60_1960 Protein
Protein
QED21617.1
AIY22246.1
Portugal_NHV_1968 Protein
Protein
QED21617.1
AIY22405.1
Russia_Kashino_2013 Protein
Protein
CAN10155.1
QED21617.1
Benin_1997 Protein
Protein
Protein
CAN10155.1
QED21617.1
CAN10155.1
South_Africa_KNP_Pretorisuskop_1996 Protein
Protein
CAN10155.1
QED21617.1
South_Africa_MGR_Mkuzi_1979 Protein
Protein
CAN10155.1
QED21617.1
Malawi_Lil_1983 Protein
Protein
CAN10155.1
QED21617.1
Kenya_1950 Protein
Protein
CAN10155.1
QED21617.1
Namibia_Warthog_1980 Protein
Protein
CAN10155.1
QED21617.1
South_Africa_Warmbaths_1987 Protein
Protein
CAN10155.1
QED21617.1
Malawi_Tengani_1962 Protein
Protein
CAN10155.1
QED21617.1
China_HLJ_2018 Protein
Protein
QED21617.1
QBH90543.1
China_LN_2018 Protein
Protein
QED21617.1
QBH90728.1
China_wbBS01_2018 Protein
Protein
QED21617.1
QDL88086.1
Ukraine_Kyiv_2014 Protein
QED21618.1
Belgium_Etalle_wb_2018 Protein
Protein
QED21617.1
QED90498.1
Lithuania_LT14_2014 Protein
Protein
QED21617.1
QEY87861.1
South_Africa_1985 Protein
Protein
QED21617.1
QGM12909.1
South_Africa_2_2008 Protein
Protein
QED21617.1
QGM12835.1
Zambia_LIV_1983    
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