Strain
South_Africa_1985
(Region: South Africa; Strain: SPEC_57; Date: 1985)
Gene
pB475L
Description
With frameshift mutation but translatable,
pB475L
Location
GenBank Accession
Sequence
CDS
ATGCAAAATTTACAGTTACATCTCCACCGGACCAATCATTGCTACAATTTGCAGATTCTTCAAAAAGGCCTGTCTGGTTGTATGTCTTCTGTTCAGGTTTCCAAAAGTTTTCCAAAAATGGATTTTGTACAATCGGCTCATCTTGTTTTTCTTCTTCAAGGATATTTTCCTTATTATCAAGAACAGCTTCTTTATACTCAGGTTTATCTTGTTTATATTCAGGTTTATCTTGTTTATACTCAAGAATATCTTCTTCCTCAGGTTTATCCTGTTTATTCGCAAGAATATCTTCTTCCTCAGGGTTATCCTGTTTATTCGCAAGAATATTTTCTTCCTCAGGTTTATCCTGTCTATACTCAACAATATCTTTCTCGCTATATCCATTTTTACTGTGCAGTTCTTGGTTTTGCAGAGAATTATCAAAATCTACTTTACTTGTCCTACACCGTGGCACAGGATACTTATCTGTTGGTTTACTTACTATACTCCTCGAATGTGGCACAGGGTATTTGTTTGGTGTCTTGCTGGTTACCTCTTGGCTTGTTATTACTTCTTGTTTTCTCAATATTTCCGTCTCTACTACTTCTTTTTGTTCCGCCGGTGTCTCTTTTTGGTATTCTTCATTACAAAAATGTTCAGAGGGTATTGTTTCAATATACTTTGTGTGTGGATACCTGCTCTTTGTTGTACAAGAGCGTTGTATTTGCTGTTACAGGAGTTGTACAAGTCGCCGGTATTCACTCTGTCTTTTTTCATATTTTTTACGTACCGTGGAGAGATCTGCTACGAGCGACTTTTTTTCAGATGTTATTTCTTCAATTTGTTGCAGAAGGCTGCGATTGTATGTACTATGTCTTGCATACGTTTCTTCTATCTCTGTCTCCGGCTCCACATACGCCTGTTTTCGCAGAAATTTATTGTATACTTCCATTCTTTTTTTGTGCAGAAAGGTACGACTATATTCTTGCATTTCTTTCGTATCTTTATGGTACTTTTCTTTCCGGTTTTTGTTATTACAGGGCAGCATTTTTTCTGTTGTGTTACAGGTGCCCAGATTGCTATTGTACTCGCACAGTATCAATTCCAAGATACATTCTTTCTTTTCAAGGCTTATACATTGGCTGTATTCTTTACGTATGCAAGAGTCAACAATCGTTGTTACGAAGTTTGCAAAGTTTATTGTTTTGCTGTTATTTTGGGTATTGCTACAAAAGTATTTGTACAAACTATCTACCATTTTTTCATACAGTTTTTTATTTTGTTTATCCCCTACAATATACCCCTTTACTTGTTACTGTTATTCCGTATCAATGGAATGTTTTTTGTATACTGCATTTTTATATACAAAGTTATACAAAATGTTGTTACAATACGCACCAAGGGTTTCAAAAATACTTATATCGTGGGATTCTTCCTGTTCCATTATATCATATGTAA
Protein
MQNLQLHLHRTNHCYNLQILQKGLSGCMSSVQVSKSFPKMDFVQSAHLVFLLQGYFPYYQEQLLYTQVYLVYIQVYLVYTQEYLLPQVYPVYSQEYLLPQGYPVYSQEYFLPQVYPVYTQQYLSRYIHFYCAVLGFAENYQNLLYLSYTVAQDTYLLVYLLYSSNVAQGICLVSCWLPLGLLLLLVFSIFPSLLLLFVPPVSLFGILHYKNVQRVLFQYTLCVDTCSLLYKSVVFAVTGVVQVAGIHSVFFHIFYVPWRDLLRATFFQMLFLQFVAEGCDCMYYVLHTFLLSLSPAPHTPVFAEIYCILPFFFCAERYDYILAFLSYLYGTFLSGFCYYRAAFFLLCYRCPDCYCTRTVSIPRYILSFQGLYIGCILYVCKSQQSLLRSLQSLLFCCYFGYCYKSICTNYLPFFHTVFYFVYPLQYTPLLVTVIPYQWNVFCILHFYIQSYTKCCYNTHQGFQKYLYRGILPVPLYHMX
Summary
Uniprot
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
479
Number of predicted TMHs:
10
Exp number of AAs in TMHs:
208.75133
Exp number, first 60 AAs:
0.95593
Total prob of N-in:
0.73799
inside
1 - 125
TMhelix
126 - 145
outside
146 - 154
TMhelix
155 - 177
inside
178 - 183
TMhelix
184 - 206
outside
207 - 233
TMhelix
234 - 256
inside
257 - 268
TMhelix
269 - 291
outside
292 - 295
TMhelix
296 - 315
inside
316 - 321
TMhelix
322 - 344
outside
345 - 358
TMhelix
359 - 380
inside
381 - 391
TMhelix
392 - 414
outside
415 - 428
TMhelix
429 - 448
inside
449 - 479
Population Genetic Test Statistics
Pi
0.0342831
Theta
0.0500616
Tajima's D
-0.8508641
CLR
0
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 |
Protein |
QGM12729.1 |
|
| South_Africa_2_2008 |
Protein |
QGM12729.1 |
|
| Zambia_LIV_1983 |
Protein Protein |
QGM12729.1 QGM12729.1 |
