Strain
South_Africa_1985
(Region: South Africa; Strain: SPEC_57; Date: 1985)
Gene
p300_4L
Description
With frameshift mutation but translatable,
p300_4L
Location
GenBank Accession
Sequence
CDS
ATGTATGGGTTTACGTTATCCCAGGGATTGTTTATTTGTATATTTCCTATATACGAACACAACGCCATGTTCATATATCTTTCATTTTGGTATGCTTTTTGTTACATCTTCAAGGATGCCGTACCTCCGAGTGTGTATCAGCAAACAAACGTCCGCACTTTTCCATGGGTCGCAGCCCATTCCATTCCGTACCTCAGCATCCTTTGCTGTATTTTTTTATTCGCTTTATACAAAAAGCTTTTCATCCATTCCACGTTCTCATACAAACAGGCACTTACAAAGAGCACTACGGTTACTGTACTCTTATTATACAATGTACGAATGTATGTTTTACTTATTTTTTTCAACGCGTGTTCCATACCATGTTTTACCGCCATACAAATACAAAACCAATACCAACTTTTTCTATACAAGGTTTTGCTGTACACATATATACGAGCAAAATATATTTCAAACTCTATATTCTTATTATACAAAAACTCGAGACAGTCATTTATGTTACGACATTTTCTACAAACCTCAAAAACAGTATTTATTTCACTGTCGCTGTGGAAATGTTCATATGCTATCTGTTTATTGTCTTTACGGGTCAATTCTTTTTTCGGGAGCAGTGGTTTGCGATTTGGCAAAGGTCGTCTACAGTACTGTGCGAACTTTTCATTCGCTCCCCAACACAAAAGCCGATATGCCAACATGTACTTATCACGTTTTACCGCATATATATGCAAATACTTTATATTGTTACATGCACCATGTTGCTGTCCGTTTGGACATATGTTGCCGCATTCTGTACACTTATGTATGCGATCATACTTCTTACAACATATCCCCAAACGGGTTACTACTTCTTTGTCACGTTTTACAAACTCGACATGTTTCTTTATTGTTATTGCTTTGTGCGCAATGTTATATATACTCTGCATTTTATTAAAATGA
Protein
MYGFTLSQGLFICIFPIYEHNAMFIYLSFWYAFCYIFKDAVPPSVYQQTNVRTFPWVAAHSIPYLSILCCIFLFALYKKLFIHSTFSYKQALTKSTTVTVLLLYNVRMYVLLIFFNACSIPCFTAIQIQNQYQLFLYKVLLYTYIRAKYISNSIFLLYKNSRQSFMLRHFLQTSKTVFISLSLWKCSYAICLLSLRVNSFFGSSGLRFGKGRLQYCANFSFAPQHKSRYANMYLSRFTAYICKYFILLHAPCCCPFGHMLPHSVHLCMRSYFLQHIPKRVTTSLSRFTNSTCFFIVIALCAMLYILCILLKX
Summary
Uniprot
ProteinModelPortal
PDB
5A5C
E-value=5.40957,
Score=67
Ontologies
Subcellular Location
From MSLVP
Host nucleus. Host cytoplasm.
Topology
Length:
312
Number of predicted TMHs:
7
Exp number of AAs in TMHs:
139.30701
Exp number, first 60 AAs:
28.34604
Total prob of N-in:
0.36711
POSSIBLE N-term signal
sequence
outside
1 - 14
TMhelix
15 - 37
inside
38 - 53
TMhelix
54 - 76
outside
77 - 95
TMhelix
96 - 118
inside
119 - 138
TMhelix
139 - 158
outside
159 - 177
TMhelix
178 - 200
inside
201 - 236
TMhelix
237 - 259
outside
260 - 286
TMhelix
287 - 309
inside
310 - 312
Population Genetic Test Statistics
Pi
0.0492638
Theta
0.0637147
Tajima's D
-0.5823167
CLR
0.576226
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 |
Protein |
QGM12683.1 |
|
| South_Africa_2_2008 |
Protein |
QGM12806.1 |
|
| Zambia_LIV_1983 |
Protein Protein |
QGM12683.1 QGM12683.1 |
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