Strain
Zambia_LIV_1983
(Region: Zambia; Strain: LIV_5_40; Date: 1983)
Gene
pB475L
Description
Annotated in NCBI,
B475L
Location
GenBank Accession
Sequence
CDS
ATGCAAAATTTATACTTACATCTCCGCCGGACCAATCATTGCTACAATTTGTACATTCTTCAAAAAGGCCCGACTGGTTGTATGTCTTCTGCTCAGGTTTCCAAAAATTTTCCAAGAATGGATTTTGTACAATACGCTCATCTTGTTTTTCTTCTTCAAGGATATTTTCTTTGTTATCAAGAACAGCTTCTTTACACTCAGGTGTATCCTGTTTATACTCAGGTTTATCCTGTTCAATCGCAAGAATATTATCTTCCTCAGGTTTATCCTGTTCAATCGCAAGAATATTATCTTCTTCAGGTATATCCTGTTTATTCGCAAGAATACTTTCTTCCTCAGGTTTATCCTGTTCAATCGCAAGAATATCTTTCTCGCTATATCCGTTTTTACTGTGTACTTCTTGGTTTTGTACAGAATTATCAAAATCTACTTTACTTGTTGTTCTACATCGTGGCACAGGATACTTATCTGTTGGTTTACTTACTATACTCCTCGAATGTGGCACGGGATATTTGTTTGGTGTCTTGCTGGTTACCTCTTGGCTTGTTATTACTTCTTGTTTTCTCAATATTTCCATCTCTACTACTTCTTTTTGTTCCGCCGGTGTCTCTTTTTGGTATTCTTCATTACAAAAATGTTCAGAGGGTATTGTTTCAATATACTTTGTGTGTGGATACCTGCTCTTTGTTGTACAAGAGCGTTGTATTTGCTGTTATACGAGTTGTACAAGTCGCCGGTATTCACTCTGTCTTTTTTCATATTTTTTACGTACCGTGGAGAGATCTGCTATGTGCGACTTTTTTTCAGATGTTATTTCTTCAATTTGTTGTACAAGGCTGCGATTGTATGTACTATGTCTTGCATACGTTTCTTCTATTTCTGTCTCCGGTTCCACATACGCCTGTTTTCGCAAAAATTTGTTGTATACTTCCATTCTTTTTTTGTGCAGAAAGGTATGTCTATATTCTTGCATTTCTTTCGTATCTTTATGGTACTTTTCTTTCCGGTTTTTGTTATTATACGGCAGCATTTTTTCTGTTGTGTTATACGTGCCCAGATTGCTATTGTACTCGCACAGTACCAATTCCAAGATACATTCTTTCTTTTCAAGGCTTATACATTGGCTGTATTCTTTACGTATGCAAGAATCAACAATCGTTGTTACGAAGTTTGCAAAGTTTATTGTTTTGCTGTTATTTTGGGTATTATTACAAAAATATTTGTACAAACTATCTACCATTTTTTCATATACTTTTTTATTTTGTTTATCCCCTACAATATACCCCTTTACTTGTTACTGTTATTCCGTATCAATGGAATGTTTTTTGTATACTGCATTTTTGTATACAAAGTTATACAAAATGTTGTTACAATACGCACCAAGGGTTTCAAAAATACTTATATCGTGGGATTCTTCCTGTTCCATTATATCATATGTAA
Protein
MQNLYLHLRRTNHCYNLYILQKGPTGCMSSAQVSKNFPRMDFVQYAHLVFLLQGYFLCYQEQLLYTQVYPVYTQVYPVQSQEYYLPQVYPVQSQEYYLLQVYPVYSQEYFLPQVYPVQSQEYLSRYIRFYCVLLGFVQNYQNLLYLLFYIVAQDTYLLVYLLYSSNVARDICLVSCWLPLGLLLLLVFSIFPSLLLLFVPPVSLFGILHYKNVQRVLFQYTLCVDTCSLLYKSVVFAVIRVVQVAGIHSVFFHIFYVPWRDLLCATFFQMLFLQFVVQGCDCMYYVLHTFLLFLSPVPHTPVFAKICCILPFFFCAERYVYILAFLSYLYGTFLSGFCYYTAAFFLLCYTCPDCYCTRTVPIPRYILSFQGLYIGCILYVCKNQQSLLRSLQSLLFCCYFGYYYKNICTNYLPFFHILFYFVYPLQYTPLLVTVIPYQWNVFCILHFCIQSYTKCCYNTHQGFQKYLYRGILPVPLYHMX
Summary
Uniprot
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
480
Number of predicted TMHs:
9
Exp number of AAs in TMHs:
200.7199
Exp number, first 60 AAs:
6.71153
Total prob of N-in:
0.57992
Length:
479
Number of predicted TMHs:
9
Exp number of AAs in TMHs:
200.61108
Exp number, first 60 AAs:
6.71065
Total prob of N-in:
0.57999
outside
1 - 141
TMhelix
142 - 164
inside
165 - 176
TMhelix
177 - 199
outside
200 - 234
TMhelix
235 - 257
inside
258 - 269
TMhelix
270 - 292
outside
293 - 296
TMhelix
297 - 316
inside
317 - 322
TMhelix
323 - 345
outside
346 - 359
TMhelix
360 - 382
inside
383 - 394
TMhelix
395 - 417
outside
418 - 426
TMhelix
427 - 449
inside
450 - 480
outside
1 - 141
TMhelix
142 - 164
inside
165 - 176
TMhelix
177 - 199
outside
200 - 234
TMhelix
235 - 257
inside
258 - 269
TMhelix
270 - 292
outside
293 - 296
TMhelix
297 - 316
inside
317 - 322
TMhelix
323 - 345
outside
346 - 359
TMhelix
360 - 382
inside
383 - 394
TMhelix
395 - 417
outside
418 - 426
TMhelix
427 - 449
inside
450 - 479
Population Genetic Test Statistics
Pi
0.0353133
Theta
0.0489238
Tajima's D
-0.8678711
CLR
0.088106
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 |
Protein |
QGM12729.1 |
|
| South_Africa_2_2008 |
Protein |
QGM12729.1 |
|
| Zambia_LIV_1983 |
Protein Protein |
QGM12729.1 QGM12729.1 |
