ASFVdb The African Swine Fever Virus Database
Strain
Ukraine_Kyiv_2014 (Region: Ukraine;  Strain: ASFV/Kyiv/2016/131;  Date: 2014)
Gene
NP1450L
Description
Annotated in NCBI,  ASFV_Kyiv_2016_131_00157
GenBank Accession
Full name
DNA-directed RNA polymerase subunit       + More
Probable DNA-directed RNA polymerase subunit 1 homolog      
 

Sequence

CDS
ATGCTTTTACGTCTAAAGAACCCGGAAGTGGAAACAAATAAAACATATGCGCAAGAAATTGCTAACAGCATAGAGCTTATAACGTTCGAACGGTTGATATTGCAGTGGCACCTATTGTACGAAACGTATTCAAGCACAAAAAAAAATGTGATGTACCCCGATTTTGCAAGTGATGTGGAATGGATGACGGATTTTCTGGAAAACCATCCTCTACTACAGCCCCCAGAGGATATTGCAAACTGGTGTATCCGCTTGGAATTAAACAAAACAACCATGATATTAAAAAGCATTAGTCTAGAAAGTATTATTAATAGTCTAAGAGCTAAACACCCCAACACCTACATCATGCATTCTGTGGAAAACACGGCCTCAGGGATTCCCATCATTATTCGCATATACCTACGGGAAAGCGCCTTTAGACGCAGTACCAATACCCGAATGGCTACGGATGAAAAAATTGCCGTAAATGTGGTGGATAAACTATTAAATAGCACGATTAGAGGAATACCAGGCATCAAAAATGCGAATGTTGTTAAGCTTATGCGCCACCGTGTGGATGCCCAGGGGAAACTGGTAAGACTAGACAATATCTACGCCATCAAAACAAACGGGACTAATATTTTTGGCGCAATGCTTGATGATAACATCGACCCATACACCATCGTATCGTCCTCTATAGGAGACACCATGGAGCTTTACGGCATAGAAGCGGCACGGCAAAAAATTATTAGTGAAATTAGAACGGTTATGGGGGACAAGGGTCCCAACCATCGTCATTTACTCATGTACGCAGATCTCATGACAAGAACGGGACAGGTTACCTCTCTAGAAAAGGCAGGGCTTAATGCAAGAGAGCCTTCCAACGTGTTGTTGCGAATGGCCTTGTCGTCTCCAGTCCAGGTCTTGACAGATGCTGCGGTTGACTCCGCCGTGAATCCCATTTACGGTATTGCCGCGCCTACCCTTATGGGCTCTGTTCCTCGCATAGGGACCATGTACTCTGACATCATTATGGATGAAAAATATATTACGGAAAATTATAAAAGTGTTGATTCCTTGATTGATATGTTATAG
Protein
MLLRLKNPEVETNKTYAQEIANSIELITFERLILQWHLLYETYSSTKKNVMYPDFASDVEWMTDFLENHPLLQPPEDIANWCIRLELNKTTMILKSISLESIINSLRAKHPNTYIMHSVENTASGIPIIIRIYLRESAFRRSTNTRMATDEKIAVNVVDKLLNSTIRGIPGIKNANVVKLMRHRVDAQGKLVRLDNIYAIKTNGTNIFGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKGPNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIYGIAAPTLMGSVPRIGTMYSDIIMDEKYITENYKSVDSLIDML

Summary

Function
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Component of the DNA-dependent RNA polymerase that catalyzes the transcription in the cytoplasm of viral DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template (By similarity).
Catalytic Activity
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
Subunit
Component of the RNA polymerase that consists of at least 6 subunits.
Similarity
Belongs to the RNA polymerase beta' chain family.
Keywords
Complete proteome   DNA-directed RNA polymerase   Nucleotidyltransferase   Reference proteome   Transcription   Transferase  
Feature
chain  Probable DNA-directed RNA polymerase subunit 1 homolog
EC Number
2.7.7.6
Pfam
PF04990   RNA_pol_Rpb1_7
PF04998   RNA_pol_Rpb1_5
PF05000   RNA_pol_Rpb1_4
PF04983   RNA_pol_Rpb1_3
PF00623   RNA_pol_Rpb1_2
PF04997   RNA_pol_Rpb1_1
Interpro
IPR007081   RNA_pol_Rpb1_5
IPR038593   RNA_pol_Rpb1_7_sf
IPR007073   RNA_pol_Rpb1_7
IPR007066   RNA_pol_Rpb1_3
IPR000722   RNA_pol_asu
IPR038120   Rpb1_funnel_sf
IPR007083   RNA_pol_Rpb1_4
IPR006592   RNA_pol_N
IPR007080   RNA_pol_Rpb1_1
IPR042102   RNA_pol_Rpb1_3_sf
PDB
6J51     E-value=4.64905e-133,     Score=1221

Ontologies

KEGG

Subcellular Location

From MSLVP
Cytoplasm

Topology

Length:
357
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0765900000000002
Exp number, first 60 AAs:
0.00328
Total prob of N-in:
0.00593
outside
1  -  357
 
 

Population Genetic Test Statistics

Pi
0.0284587
Theta
0.0377339
Tajima's D
-0.8138612
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62780.1
China_AnhuiXCGQ_2018 Protein
AYW34070.1
China_ASFV-SY18_2018 Protein
AKO62780.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95873.1
Poland_Pol16_20538_o9_2016-2017 Protein
CBW46765.1
Poland_Pol16_20540_o10_2016-2017 Protein
CBW46765.1
Poland_Pol16_29413_o23_2016-2017 Protein
CBW46765.1
Poland_Pol17_03029_C201_2016-2017 Protein
CBW46765.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96156.1
Poland_Pol17_05838_C220_2016-2017 Protein
CBW46765.1
Poland_ASFV_POL_Podlaskie_2015 Protein
CBW46765.1
Uganda_R8_2015 Protein
AXB49327.1
Uganda_R7_2015 Protein
AXB49501.1
Uganda_R25_2015 Protein
AXB49673.1
Uganda_N10_2015 Protein
AXB49844.1
Uganda_R35_2015 Protein
AXB50017.1
Estonia_2014 Protein
SPS73522.1
Italy_26544_OG10_2010 Protein
AJZ77039.1
Italy_47_Ss_2008_2008 Protein
AOO54449.1
Portugal_OURT_88.3_1988 Protein
CAN10448.1
Spain_E75_1975 Protein
CBH29199.1
Russia_Georgia_2007 Protein
Protein
CBW46765.1
CBW46765.1
Kenya_Tk1_2005 Protein
AJL34112.1
Kenya_Bus_2006 Protein
AJL34277.1
Russia_Odintsovo_2014 Protein
CBW46765.1
Portugal_L60_1960 Protein
AIY22290.1
Portugal_NHV_1968 Protein
AIY22448.1
Russia_Kashino_2013 Protein
CBW46765.1
Benin_1997 Protein
CAN10198.1
South_Africa_KNP_Pretorisuskop_1996 Protein
CBW46765.1
South_Africa_MGR_Mkuzi_1979 Protein
CBW46765.1
Malawi_Lil_1983 Protein
CBW46765.1
Kenya_1950 Protein
CBW46765.1
Namibia_Warthog_1980 Protein
CBW46765.1
South_Africa_Warmbaths_1987 Protein
CBW46765.1
Malawi_Tengani_1962 Protein
CBW46765.1
China_HLJ_2018 Protein
QBH90587.1
China_LN_2018 Protein
QBH90772.1
China_wbBS01_2018 Protein
QDL88130.1
Ukraine_Kyiv_2014 Protein
Protein
Protein
Protein
QED21693.1
QED21694.1
QED21695.1
QED21696.1
Belgium_Etalle_wb_2018 Protein
QED90542.1
Lithuania_LT14_2014 Protein
QEY87905.1
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983    
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