ASFVdb The African Swine Fever Virus Database
Strain
Ukraine_Kyiv_2014 (Region: Ukraine;  Strain: ASFV/Kyiv/2016/131;  Date: 2014)
Gene
B385R
Description
Annotated in NCBI,  ASFV_Kyiv_2016_131_00128
GenBank Accession
Full name
Zinc finger protein B385R       + More
 

Sequence

CDS
ATGGACGAAATCATCAATAAATACCAAGCTGTTGAAAAACTTTTTAAGGAAATTCAGCAAGGATTGGCCGCGTATGATCAATACAAGACCTTAATTAGTGAAATGATGCACTATAATAATCATATCAAGCAGGAGTATTTTAACTTTTTAATGATTATTTCACCTTATCTTATTAGGGCGCATAGCGGAGAAACGCTGCGAAACAAAGTAAATAATGAAATTAAACGTCTTATTTTGGTTGAAAATATCAATACCAAAATATCTAAAACGCTGGTAAGTGTTAATTTTTTACTACAGAAAAAACTTTCAACGGACGGGGTGAAAACGAAAAACATGTGGTGCACCAATAATCCCATGCTGCAGGTAAAAACAGCCCACAACCTTTTTAAGCAACTATGCGACACACAGTCCAAAACTCAATGGGTACAAACTTTAAAATATAAGGAATGCAAGTATTGTCATACCGACATGGTGTTTAACACCACGCAGTTTGGGCTGCAATGTCCTAACTGCGGTTGTATTCAAGAATTGATGGGAACCATTTTTGATGAAACACATTTTTACAACCATGATGGGCAGAAAGCAAAGTCAGGTATCTTTAACCCTAACCGTCACTATCGGTTTTGGATAGAACATATTCTTGGTAGAAATCCAGAACAAGAGTTGGGGACCAAACAAGATCCCTGCGGAACCAAGGTGTTGCAACAACTAAAAAAAATTATTAAGCGCGATAATAAATGCATCGCGCTTTTGACGGTCGAAAATATTCGAAAAATGTTAAAAGAGATAAACCGCACAGACTTAAATAATTGTGTTTCTCTTATATTGCGTAAACTTACCGGAGTAGGGCCGCCTCAAATATCAGAGTCGATTTTACTACGAGGCGAATACATATTTACAGAGGCAATTAAGATACGGGAAAAAGTGTGTAAAAAAGGGCGTATTAATAGGAATTATTATCCGTATTATATATATAAAATTTTTGACGCCATTTTGCCTCCAAATGATACCACGAATCGACGCATTTTACAATATATTCATTTGCAAGGAAATGATACGCTAGCTAATAATGATAGTGAGTGGGAATCTATCTGTATGGAGCTCCCTGAAATAAAATGGAAGCCCACAGATCGAACCCATTGTGTTCATTTTTTTAAAGATGAAGATTTTTTAGATGATTTTTTTAGTTTTTTAAAAGACGAAAAAATTTTTTAA
Protein
MDEIINKYQAVEKLFKEIQQGLAAYDQYKTLISEMMHYNNHIKQEYFNFLMIISPYLIRAHSGETLRNKVNNEIKRLILVENINTKISKTLVSVNFLLQKKLSTDGVKTKNMWCTNNPMLQVKTAHNLFKQLCDTQSKTQWVQTLKYKECKYCHTDMVFNTTQFGLQCPNCGCIQELMGTIFDETHFYNHDGQKAKSGIFNPNRHYRFWIEHILGRNPEQELGTKQDPCGTKVLQQLKKIIKRDNKCIALLTVENIRKMLKEINRTDLNNCVSLILRKLTGVGPPQISESILLRGEYIFTEAIKIREKVCKKGRINRNYYPYYIYKIFDAILPPNDTTNRRILQYIHLQGNDTLANNDSEWESICMELPEIKWKPTDRTHCVHFFKDEDFLDDFFSFLKDEKIFX

Summary

Similarity
Belongs to the asfivirus B385R family.
Keywords
Complete proteome   Metal-binding   Zinc   Zinc-finger   Reference proteome  
Feature
chain  Zinc finger protein B385R
Pfam
PF04947   Pox_VLTF3
PF08792   A2L_zn_ribbon
Interpro
IPR014900   VLTF-3_Zn_ribbon
IPR007031   Poxvirus_VLTF3
PDB
4Q0C     E-value=0.895894,     Score=75

Ontologies

KEGG

Subcellular Location

From MSLVP
Capsid

Topology

Length:
405
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.736589999999998
Exp number, first 60 AAs:
0.62634
Total prob of N-in:
0.06259
Length:
404
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.736659999999998
Exp number, first 60 AAs:
0.62628
Total prob of N-in:
0.06277
outside
1  -  405
outside
1  -  404
 
 

Population Genetic Test Statistics

Pi
0.0252475
Theta
0.0341329
Tajima's D
-1.0678642
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62762.1
China_AnhuiXCGQ_2018 Protein
AYW34052.1
China_ASFV-SY18_2018 Protein
AKO62762.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95855.1
Poland_Pol16_20538_o9_2016-2017 Protein
QED21664.1
Poland_Pol16_20540_o10_2016-2017 Protein
QED21664.1
Poland_Pol16_29413_o23_2016-2017 Protein
QED21664.1
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96043.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96138.1
Poland_Pol17_05838_C220_2016-2017 Protein
QED21664.1
Poland_ASFV_POL_Podlaskie_2015 Protein
QED21664.1
Uganda_R8_2015 Protein
AXB49309.1
Uganda_R7_2015 Protein
AXB49483.1
Uganda_R25_2015 Protein
AXB49655.1
Uganda_N10_2015 Protein
AXB49826.1
Uganda_R35_2015 Protein
AXB49999.1
Estonia_2014 Protein
SPS73504.1
Italy_26544_OG10_2010 Protein
AJZ77078.1
Italy_47_Ss_2008_2008 Protein
AOO54422.1
Portugal_OURT_88.3_1988 Protein
CAN10430.1
Spain_E75_1975 Protein
CBH29182.1
Russia_Georgia_2007 Protein
CBW46747.1
Kenya_Tk1_2005 Protein
AJL34094.1
Kenya_Bus_2006 Protein
AJL34259.1
Russia_Odintsovo_2014 Protein
QED21664.1
Portugal_L60_1960 Protein
AIY22272.1
Portugal_NHV_1968 Protein
AIY22430.1
Russia_Kashino_2013 Protein
QED21664.1
Benin_1997 Protein
CAN10180.1
South_Africa_KNP_Pretorisuskop_1996 Protein
QED21664.1
South_Africa_MGR_Mkuzi_1979 Protein
QED21664.1
Malawi_Lil_1983 Protein
QED21664.1
Kenya_1950 Protein
QED21664.1
Namibia_Warthog_1980 Protein
QED21664.1
South_Africa_Warmbaths_1987 Protein
QED21664.1
Malawi_Tengani_1962 Protein
QED21664.1
China_HLJ_2018 Protein
QBH90569.1
China_LN_2018 Protein
QBH90754.1
China_wbBS01_2018 Protein
QDL88112.1
Ukraine_Kyiv_2014 Protein
Protein
QED21664.1
QED21664.1
Belgium_Etalle_wb_2018 Protein
QED90524.1
Lithuania_LT14_2014 Protein
QEY87887.1
South_Africa_1985 Protein
QGM12920.1
South_Africa_2_2008 Protein
QGM12845.1
Zambia_LIV_1983 Protein
QGM12730.1
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