ASFVdb The African Swine Fever Virus Database
Strain
Belgium_Etalle_wb_2018 (Region: Belgium;  Strain: Belgium/Etalle/wb/2018;  Date: 2018)
Gene
C475L
Description
Annotated in NCBI,  NA
GenBank Accession
Full name
Putative poly(A) polymerase catalytic subunit      
 

Sequence

CDS
ATGACGTCTTTACTAAAGACTGATTTTAATGTTTCTAAGTACCGGCTCATTGCTCAAAAACGTGAGGCAAATGCCGTGGAGATTGAGGCGGCTTTGGAGGTGGTCCGCGAATTTATCATAAAGAAAAAGCTTATTTTGTACGGGGGGATTGCCATTGATTATGCCCTGCATCTTAAAGGCAGCTCAATTTATCCCGAGGGAGAAAGACCCGACTTTGATATGTTTTCCCCCAACCACGTTGAGGACGCCTACGAACTTGCTGACATTTTGTATGAAAAGGGCTTCAAGCAGGTGGGCACGGTGCGCGCCATCCATGTGCAGACCATGCGGGTGCGCACGGACTTTGTGTGGGTTGCTGATCTTTCATATATGCCCCCCAATATCTTTAACACCATACCCACATTAACGTATAAAAACCTTAAAATCATTCACCCCGATTACCAGCGGGCCGGGCTACACCTAGCATTTTGCTTTCCTTTTGATAACCCACCAAGGGAAGATGTTTTTAGCAGGTTTAAAAAGGATTTGCAGCGGTATAACCTCATAGAAAAATATTACCCCATTCCCGTTGTTCCTGTGAAGTCGACATACGAAAGTAAAACGTTTTCAATTCCCTTTAAACAAGTGGCCATACACGGCTTTGCGGCATACGCCCTCCTGTACCAGACTCTAAATGAGCTGAGAATTACCTGCAAAGTCCCGGAGTGGAAAACAGAATTTCCACAACCATCTTACTCCTACCATAAGAATGATAAAAACATAACACTTACCGTGGATATGCCCAAAGCCTATCCCGCGCTGGTGTTAGCGACGTACAACCCGGAAGAAGTCATAAAAGAAATGGGCCTTCACCTGACTGAGATATGTGAGCCCTACATGGACTATAGTCCCCCTATATTCAAGACGAACGACATACATTTTTTTAGCACTATGTTTAAAGAGCTAGCGATATCTATCATTCAAGATAACCTTATTGTGGTGTCTCCCCAGTACTTACTGCTTTATTTTCTATACGGCGCTTTTGCAACGCCTGCCGATAAGTCGCTATTTTTATTTTACTACAATGCGACGCTTTGGATTCTCGAAAAGGCAGACTCCCTGCTAAACATCATACAAAAACAAACAAGTCCGGAAGAGTTTACGAGGTTTGCTAATACCAGTCCATTTGTATTAACAACGCGCGTACTAAGTTGTTCACAGGAACGTTGCACCTTTAGCCCGGCATATAGAATCTCCCTGGCCAACGACGTACAACAGTCGCAGTTACCCCTCCCAAAAACCCATTTTTTAAGCAATTCTCTCCCAGATGTTTCAACACTCCCTTATAATTATTATCCGGGCAAGGGAAAAGATAGGCCCACAAATTTCAGCTATGAAAAAAATTTATTGTTTAACATAGGAGGAAAATGTACTCCGTCTGCGATGTAG
Protein
MTSLLKTDFNVSKYRLIAQKREANAVEIEAALEVVREFIIKKKLILYGGIAIDYALHLKGSSIYPEGERPDFDMFSPNHVEDAYELADILYEKGFKQVGTVRAIHVQTMRVRTDFVWVADLSYMPPNIFNTIPTLTYKNLKIIHPDYQRAGLHLAFCFPFDNPPREDVFSRFKKDLQRYNLIEKYYPIPVVPVKSTYESKTFSIPFKQVAIHGFAAYALLYQTLNELRITCKVPEWKTEFPQPSYSYHKNDKNITLTVDMPKAYPALVLATYNPEEVIKEMGLHLTEICEPYMDYSPPIFKTNDIHFFSTMFKELAISIIQDNLIVVSPQYLLLYFLYGAFATPADKSLFLFYYNATLWILEKADSLLNIIQKQTSPEEFTRFANTSPFVLTTRVLSCSQERCTFSPAYRISLANDVQQSQLPLPKTHFLSNSLPDVSTLPYNYYPGKGKDRPTNFSYEKNLLFNIGGKCTPSAM

Summary

Function
Polymerase that creates the 3'-poly(A) tail of mRNA's.
Catalytic Activity
ATP + RNA(n) = diphosphate + RNA(n)-3'-adenine ribonucleotide
Similarity
Belongs to the poxviridae poly(A) polymerase catalytic subunit family. Highly divergent.
Keywords
ATP-binding   Complete proteome   mRNA processing   Nucleotide-binding   Reference proteome   Transcription   Transferase  
Feature
chain  Putative poly(A) polymerase catalytic subunit
PDB
4P37     E-value=2.41589e-10,     Score=158

Ontologies

KEGG

Subcellular Location

From MSLVP
Capsid

Topology

Length:
475
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.09706
Exp number, first 60 AAs:
0.10529
Total prob of N-in:
0.03956
outside
1  -  475
 
 

Population Genetic Test Statistics

Pi
0.0318659
Theta
0.043235
Tajima's D
-0.9864593
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62749.1
China_AnhuiXCGQ_2018 Protein
AYW34038.1
China_ASFV-SY18_2018 Protein
AKO62749.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95842.1
Poland_Pol16_20538_o9_2016-2017 Protein
CAN10167.1
Poland_Pol16_20540_o10_2016-2017 Protein
CAN10167.1
Poland_Pol16_29413_o23_2016-2017 Protein
CAN10167.1
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96030.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96125.1
Poland_Pol17_05838_C220_2016-2017 Protein
CAN10167.1
Poland_ASFV_POL_Podlaskie_2015 Protein
CAN10167.1
Uganda_R8_2015 Protein
AXB49296.1
Uganda_R7_2015 Protein
AXB49470.1
Uganda_R25_2015 Protein
AXB49642.1
Uganda_N10_2015 Protein
AXB49813.1
Uganda_R35_2015 Protein
AXB49986.1
Estonia_2014 Protein
SPS73490.1
Italy_26544_OG10_2010 Protein
AJZ77067.1
Italy_47_Ss_2008_2008 Protein
AOO54401.1
Portugal_OURT_88.3_1988 Protein
CAN10415.1
Spain_E75_1975 Protein
CBH29168.1
Russia_Georgia_2007 Protein
CBW46733.1
Kenya_Tk1_2005 Protein
AJL34081.1
Kenya_Bus_2006 Protein
AJL34246.1
Russia_Odintsovo_2014 Protein
CAN10167.1
Portugal_L60_1960 Protein
AIY22259.1
Portugal_NHV_1968 Protein
AIY22417.1
Russia_Kashino_2013 Protein
CAN10167.1
Benin_1997 Protein
Protein
CAN10167.1
CAN10167.1
South_Africa_KNP_Pretorisuskop_1996 Protein
CAN10167.1
South_Africa_MGR_Mkuzi_1979 Protein
CAN10167.1
Malawi_Lil_1983 Protein
CAN10167.1
Kenya_1950 Protein
CAN10167.1
Namibia_Warthog_1980 Protein
CAN10167.1
South_Africa_Warmbaths_1987 Protein
CAN10167.1
Malawi_Tengani_1962 Protein
CAN10167.1
China_HLJ_2018 Protein
QBH90555.1
China_LN_2018 Protein
QBH90740.1
China_wbBS01_2018 Protein
QDL88098.1
Ukraine_Kyiv_2014 Protein
Protein
QED21638.1
QED21639.1
Belgium_Etalle_wb_2018 Protein
QED90510.1
Lithuania_LT14_2014 Protein
QEY87873.1
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983    
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