ASFVdb The African Swine Fever Virus Database
Strain
China_AnhuiXCGQ_2018 (Region: China;  Strain: China/2018/AnhuiXCGQ;  Date: 2018)
Gene
H339R
Description
Annotated in NCBI,  pH339R
GenBank Accession
Full name
Protein H339R      
Alternative Name
Protein j4R
 

Sequence

CDS
ATGGCCGGTCGTGTTAAAATAAAACAGAAAGAGCTCATAGACTCTACTGTAAAAAACAAAAATGTGATGAATCTGTTCCATGAAATTATAGGCTCAAAAGGCAATATTAATTTTAGCGTTGTCTGGCCCAAGTTTAAAAAAATCAAACAGAGCGTTTATGACTACATTTCCACTCTTTCTGTGCTGGAAAAAGCAAACGTTATGCAAAACTTTGAAGCTGATAAGAAACTGTTGGAACTTTTTGTACAAAAGCTGTGGGCTGCCTATGAAGGCTATTTCAAATATCCCGAGATTGAAAAATATGAGGTGGAAGGCCAGGTAAATTTCAATCTCGTACCTCAGTGCGTCCTCGAAAAGTTTAGCCAGTTGTATAGGATAAGAATCAATTCAGAGCTTGTCACACTCATCCTAAACAGCTGTGCCTTTATGAGTAAATATAACGATTATATTCTCAAAAAAGATCCCTACATACTAACCATAACCCCCGGCCTATGCTTTTCCCCCATTCCCAACTTCGAGGACCTAAATTTTAAACATCTTTACAACAGTGATAAAAATTCTCAGCATGACAAAGAGTTTATCATGTTTATATTATATAAGCTTTATACGGCTGCCCTAGGAGTGTACAATGCCATCTCGATTCCAGACATCGACGTAGAAGACCTTGAAAATATCATCCTATCCTCGGTGAGCCAGATTAAAAAACAAATTCCGCGCTGCAAAGACGCCTTCAACAAAATTGAATCTTCGGTACACCTGTTGCGCAAAAATTTTAACACATATTACAGTGACTATGTGGGCTCAGGCTACAACCCAACCATCATTATGGAACAGTACATTAAAGACATATCACAGGATTCCAAGAACATATCACCACGCATTTCCTACCAGTTTAGAACCATCATCAAGTATTACCGCGACATGATTGCCACCAGGCATCAAACGATGGACCCCCAGGTATTAAACCTCGTAAAGCACGTCGAAAAGAAATTAGATATGCTTGATAGAGAAAAAAATTAG
Protein
MAGRVKIKQKELIDSTVKNKNVMNLFHEIIGSKGNINFSVVWPKFKKIKQSVYDYISTLSVLEKANVMQNFEADKKLLELFVQKLWAAYEGYFKYPEIEKYEVEGQVNFNLVPQCVLEKFSQLYRIRINSELVTLILNSCAFMSKYNDYILKKDPYILTITPGLCFSPIPNFEDLNFKHLYNSDKNSQHDKEFIMFILYKLYTAALGVYNAISIPDIDVEDLENIILSSVSQIKKQIPRCKDAFNKIESSVHLLRKNFNTYYSDYVGSGYNPTIIMEQYIKDISQDSKNISPRISYQFRTIIKYYRDMIATRHQTMDPQVLNLVKHVEKKLDMLDREKN

Summary

Subunit
Interacts with NACA (alpha chain of nascent polypeptide-associated complex).
Similarity
Belongs to the asfivirus H339R family.
Keywords
Complete proteome   Host cytoplasm   Host nucleus   Host-virus interaction   Late protein   Reference proteome  
Feature
chain  Protein H339R
PDB
6OGD     E-value=5.15692,     Score=68

Ontologies

KEGG

Subcellular Location

From MSLVP
Cytoplasm
From Uniprot
Host cytoplasm  
Host nucleus  

Topology

Length:
339
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
5.78677
Exp number, first 60 AAs:
0.12538
Total prob of N-in:
0.31286
outside
1  -  339
 
 

Population Genetic Test Statistics

Pi
0.0240213
Theta
0.0330058
Tajima's D
-0.9182203
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62797.1
China_AnhuiXCGQ_2018 Protein
AYW34087.1
China_ASFV-SY18_2018 Protein
AKO62797.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95889.1
Poland_Pol16_20538_o9_2016-2017 Protein
CAN10216.1
Poland_Pol16_20540_o10_2016-2017 Protein
CAN10216.1
Poland_Pol16_29413_o23_2016-2017 Protein
CAN10216.1
Poland_Pol17_03029_C201_2016-2017 Protein
CAN10216.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96172.1
Poland_Pol17_05838_C220_2016-2017 Protein
CAN10216.1
Poland_ASFV_POL_Podlaskie_2015 Protein
CAN10216.1
Uganda_R8_2015 Protein
AXB49345.1
Uganda_R7_2015 Protein
AXB49519.1
Uganda_R25_2015 Protein
AXB49691.1
Uganda_N10_2015 Protein
AXB49862.1
Uganda_R35_2015 Protein
AXB50035.1
Estonia_2014 Protein
SPS73539.1
Italy_26544_OG10_2010 Protein
AJZ77094.1
Italy_47_Ss_2008_2008 Protein
AOO54482.1
Portugal_OURT_88.3_1988 Protein
CAN10465.1
Spain_E75_1975 Protein
CBH29216.1
Russia_Georgia_2007 Protein
CBW46782.1
Kenya_Tk1_2005 Protein
AJL34129.1
Kenya_Bus_2006 Protein
AJL34294.1
Russia_Odintsovo_2014 Protein
CAN10216.1
Portugal_L60_1960 Protein
AIY22307.1
Portugal_NHV_1968 Protein
AIY22465.1
Russia_Kashino_2013 Protein
CAN10216.1
Benin_1997 Protein
Protein
CAN10216.1
CAN10216.1
South_Africa_KNP_Pretorisuskop_1996 Protein
CAN10216.1
South_Africa_MGR_Mkuzi_1979 Protein
CAN10216.1
Malawi_Lil_1983 Protein
CAN10216.1
Kenya_1950 Protein
CAN10216.1
Namibia_Warthog_1980 Protein
CAN10216.1
South_Africa_Warmbaths_1987 Protein
CAN10216.1
Malawi_Tengani_1962 Protein
CAN10216.1
China_HLJ_2018 Protein
QBH90604.1
China_LN_2018 Protein
QBH90789.1
China_wbBS01_2018 Protein
QDL88147.1
Ukraine_Kyiv_2014 Protein
QED21724.1
Belgium_Etalle_wb_2018 Protein
QED90559.1
Lithuania_LT14_2014 Protein
QEY87922.1
South_Africa_1985 Protein
QGM12935.1
South_Africa_2_2008 Protein
QGM12861.1
Zambia_LIV_1983 Protein
QGM12754.1
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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