ASFVdb The African Swine Fever Virus Database
Strain
China_ASFV-SY18_2018 (Region: China;  Strain: ASFV-SY18;  Date: 2018)
Gene
pDP42R
Description
With frameshift mutation but translatable,  member of multigene family 360
GenBank Accession
Full name
Protein MGF 360-20R      
 

Sequence

CDS
ATGTCTACTCCACTTTCTCTACAGACTCTTGTTAAAAAAGTGCTGGCCACACAGCACATATCTAAAGAACACTACTTTATTTTGAAATATTGTGGTTTATGGTGGCAT
Protein
MSTPLSLQTLVKKVLATQHISKEHYFILKYCGLWWH

Summary

Function
Plays a role in virus cell tropism, and may be required for efficient virus replication in macrophages.
Similarity
Belongs to the asfivirus MGF 360 family.
Keywords
Complete proteome   Reference proteome  
Feature
chain  Protein MGF 360-20R
PDB
3LHX     E-value=3.93914,     Score=69

Ontologies

KEGG

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
36
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0038
Exp number, first 60 AAs:
0.0038
Total prob of N-in:
0.12288
outside
1  -  36
 
 

Population Genetic Test Statistics

Pi
0.1348355
Theta
0.1945675
Tajima's D
-0.7133501
CLR
12.129446
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62685.1
China_AnhuiXCGQ_2018 Protein
AYW33954.1
China_ASFV-SY18_2018 Protein
Protein
AKO62685.1
AKO62839.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95934.1
Poland_Pol16_20538_o9_2016-2017 Protein
AXZ95945.1
Poland_Pol16_20540_o10_2016-2017 Protein
Protein
AXZ95947.1
AXZ95947.1
Poland_Pol16_29413_o23_2016-2017 Protein
AXZ95965.1
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96059.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96217.1
Poland_Pol17_05838_C220_2016-2017 Protein
AXZ96221.1
Poland_ASFV_POL_Podlaskie_2015 Protein
AXZ95947.1
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010 Protein
AJZ77102.1
Italy_47_Ss_2008_2008 Protein
AOO54310.1
Portugal_OURT_88.3_1988 Protein
CAN10351.1
Spain_E75_1975    
Russia_Georgia_2007 Protein
CBW46644.1
Kenya_Tk1_2005 Protein
AJL34007.1
Kenya_Bus_2006    
Russia_Odintsovo_2014 Protein
AXZ95947.1
Portugal_L60_1960 Protein
AIY22190.1
Portugal_NHV_1968 Protein
AIY22353.1
Russia_Kashino_2013 Protein
AXZ95947.1
Benin_1997 Protein
CAN10099.1
South_Africa_KNP_Pretorisuskop_1996 Protein
AXZ95947.1
South_Africa_MGR_Mkuzi_1979 Protein
Protein
AXZ95947.1
QGM12881.1
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987 Protein
Protein
AXZ95947.1
QGM12881.1
Malawi_Tengani_1962 Protein
AXZ95947.1
China_HLJ_2018 Protein
QBH90467.1
China_LN_2018 Protein
QBH90652.1
China_wbBS01_2018 Protein
QDL88011.1
Ukraine_Kyiv_2014 Protein
QED21541.1
Belgium_Etalle_wb_2018 Protein
QED90425.1
Lithuania_LT14_2014 Protein
QEY87784.1
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983    
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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