ASFVdb The African Swine Fever Virus Database
Strain
China_ASFV-SY18_2018 (Region: China;  Strain: ASFV-SY18;  Date: 2018)
Gene
pH359L
Description
Annoated by sequence mapping,  product contains possible ATP- or GTP-binding motif
GenBank Accession
Full name
Putative DNA-directed RNA polymerase subunit 3 homolog      
 

Sequence

CDS
ATGGAAAAAATTTTCCAAAACGTGGAAATCAAACCGTTTTTGATAGACTTTTCCAACCTCTTTATTAAAAATGCGGCCAAAAAACTATTTCAGCTCGAGGAGCAGTTGCCCCTCGTCCCGGTCAATGTTGTTATGGACTTTAAGGGCATTAGCAGAGCCGCGGTCCACGGCCTGTCGCGGGTCTTGCAAGATGAAATTCCCAATTATATGCTAGATATTAAGCCCGGTGGGTATAAGATCGAGGATTCCACGGACCTGTTTATGACGGAACAATTTATTAGAAACCGCATTAATTTCATTCCGATTTATGCGAAAAACGAGACACTGGTATTTGCTCTGCGGAGTTTAAACAATAGCTGTGAGGTTAAAACCATCTATAGCCGCGATCTCATCCAGGTGGCAGGCCCTAAGCTTAAATACCCGATTTTTAATCCTACCTTTGAGATTGGCTTCCTACAACCCGGAAAATCGTTGATTATAGAGGATATCTATATTAAAAAGGGCATAGGACGAAAGCATGCCGCCTTTAATCTTGCCGTTAAAACACATTTTTCCCACCTTGACATTGAACAGTACCCAACGGATAAAAAAGAATATATGGCGCTTAGCGGTTACAAGCAAAGCTCTATGACCTCAGACCCGCGTCACCACCGCCTGGGGCTTTGCTTTCCAGCGGTGCCGCTGCCACATATCAACCAGGCCGTTCGCACGTATTTAAAAAACGCCTGCCGGATCATTATTGGCCGAATCCAAAGCATTCAAAAAATTTATGAAAACTTTGAAGAGCCGCAGCCGGAACTTGTGCTGTTTTCCATGGATGAGGAAAAAACAAAGGCCATTATCACGATAAAAGATGAAACCCATACCATCGGAAATCTGCTAAAAACATATATTTATGAAATGATTCCTGATATTAGCTTTGTGGGGTATCAGTGTGTTCCCCATAAGCAAGAAATGGTATTAACAATTATTCATAAGGCCTCACAAGAAGATTTGATAACTCTTTTAGAAAAAAGTATTCAGAACATTATCCAAACTTTTCAAATTCTTGAAAAAAATGTTGATGAACTGATTGCTTAA
Protein
MEKIFQNVEIKPFLIDFSNLFIKNAAKKLFQLEEQLPLVPVNVVMDFKGISRAAVHGLSRVLQDEIPNYMLDIKPGGYKIEDSTDLFMTEQFIRNRINFIPIYAKNETLVFALRSLNNSCEVKTIYSRDLIQVAGPKLKYPIFNPTFEIGFLQPGKSLIIEDIYIKKGIGRKHAAFNLAVKTHFSHLDIEQYPTDKKEYMALSGYKQSSMTSDPRHHRLGLCFPAVPLPHINQAVRTYLKNACRIIIGRIQSIQKIYENFEEPQPELVLFSMDEEKTKAIITIKDETHTIGNLLKTYIYEMIPDISFVGYQCVPHKQEMVLTIIHKASQEDLITLLEKSIQNIIQTFQILEKNVDELIA

Summary

Function
Component of the DNA-dependent RNA polymerase that catalyzes the transcription in the cytoplasm of viral DNA into RNA using the four ribonucleoside triphosphates as substrates.
Subunit
Component of the RNA polymerase that consists of at least 6 subunits.
Similarity
Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.
Keywords
Complete proteome   DNA-directed RNA polymerase   Reference proteome   Transcription  
Feature
chain  Putative DNA-directed RNA polymerase subunit 3 homolog
Pfam
PF13656   RNA_pol_L_2
Interpro
IPR036603   RBP11-like
IPR036643   RNApol_insert_sf
IPR009025   RBP11-like_dimer
SUPFAM
SSF55257   SSF55257
SSF56553   SSF56553
Gene 3D
PDB
6I84     E-value=0.00118803,     Score=99

Ontologies

KEGG

Subcellular Location

From MSLVP
Cytoplasm

Topology

Length:
359
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00493000000000001
Exp number, first 60 AAs:
0.0013
Total prob of N-in:
0.01310
outside
1  -  359
 
 

Population Genetic Test Statistics

Pi
0.0319172
Theta
0.0296027
Tajima's D
0.084836
CLR
0
Interpretation
Possibly Balancing Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62794.1
China_AnhuiXCGQ_2018 Protein
AYW34084.1
China_ASFV-SY18_2018 Protein
AKO62794.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95886.1
Poland_Pol16_20538_o9_2016-2017 Protein
CAN10213.1
Poland_Pol16_20540_o10_2016-2017 Protein
CAN10213.1
Poland_Pol16_29413_o23_2016-2017 Protein
CAN10213.1
Poland_Pol17_03029_C201_2016-2017 Protein
CAN10213.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96169.1
Poland_Pol17_05838_C220_2016-2017 Protein
CAN10213.1
Poland_ASFV_POL_Podlaskie_2015 Protein
CAN10213.1
Uganda_R8_2015 Protein
AXB49342.1
Uganda_R7_2015 Protein
AXB49516.1
Uganda_R25_2015 Protein
AXB49688.1
Uganda_N10_2015 Protein
AXB49859.1
Uganda_R35_2015 Protein
AXB50032.1
Estonia_2014 Protein
SPS73536.1
Italy_26544_OG10_2010 Protein
AJZ77083.1
Italy_47_Ss_2008_2008 Protein
AOO54479.1
Portugal_OURT_88.3_1988 Protein
CAN10462.1
Spain_E75_1975 Protein
CBH29213.1
Russia_Georgia_2007 Protein
CBW46779.1
Kenya_Tk1_2005 Protein
AJL34126.1
Kenya_Bus_2006 Protein
AJL34291.1
Russia_Odintsovo_2014 Protein
CAN10213.1
Portugal_L60_1960 Protein
AIY22304.1
Portugal_NHV_1968 Protein
AIY22462.1
Russia_Kashino_2013 Protein
CAN10213.1
Benin_1997 Protein
Protein
CAN10213.1
CAN10213.1
South_Africa_KNP_Pretorisuskop_1996 Protein
CAN10213.1
South_Africa_MGR_Mkuzi_1979 Protein
CAN10213.1
Malawi_Lil_1983 Protein
CAN10213.1
Kenya_1950 Protein
CAN10213.1
Namibia_Warthog_1980 Protein
CAN10213.1
South_Africa_Warmbaths_1987 Protein
CAN10213.1
Malawi_Tengani_1962 Protein
CAN10213.1
China_HLJ_2018 Protein
QBH90601.1
China_LN_2018 Protein
QBH90786.1
China_wbBS01_2018 Protein
QDL88144.1
Ukraine_Kyiv_2014 Protein
QED21720.1
Belgium_Etalle_wb_2018 Protein
QED90556.1
Lithuania_LT14_2014 Protein
QEY87919.1
South_Africa_1985 Protein
CAN10213.1
South_Africa_2_2008 Protein
CAN10213.1
Zambia_LIV_1983 Protein
CAN10213.1
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