ASFVdb The African Swine Fever Virus Database
Strain
Uganda_N10_2015 (Region: Uganda, Tororo district;  Strain: N10;  Date: 2015)
Gene
pD339L
Description
Annotated in NCBI,  contains a protein-protein interaction SHS2 domain with an architecture SHS2_Rpb7-N (pfam03876), characteristic of the SHS2 domains found in N-terminus of the archaeo-eukaryotic RNA polymerase II subunit 7 (RPB7)
GenBank Accession
Full name
Uncharacterized protein D339L      
 

Sequence

CDS
ATGATCGACCAAAAAATTTTTGAGATAACGTTGAATATTGATGATCCTGCTAATTTTTGTACAAATGTGGAGGCTCATCTTTTGAAGGAGCTTGAAAACATTTATGTAGGTAAGTGTTTCAAAAACAGTTTTATTATTAGTATTACTGGTGTCATACAACGCTCCCCTTGTTTTATTATGCGTACCAATAATAGCGGAAGGGGATATATGCACGTAAGATTTTCTGCTCTTGTTTCTTACTTAAATGCCTTTGATTTAATAGCGGCCGTTAAAATCATTAAAAACGACAATAATATTATTCTAGGCGAAAGCCTGTTGACGGAACCCGTAACTATTGTAATACCTTCGTCCGAATCACAAAATAATGTTGCAGAGGTGGGACAAATTGTGCCGGTACAGCTTGCTAATAGTAGCGTGTACTATATACCTGGCAGACAACAGGCCAGTGCCACGGGGAGTATCTTCATTCCTAAGCATACCTTTTCAGTCTATCACGTGCAAGAAGAGCTTACGCAGGAACAGGCCTTAAACCTAACAAAACTTGTTAATGTTATAGAAACGCTTCTTGATAGTCGTTCTAAAAAAGATTTCAAGCATATCTGCTTTTTTGAAAAACTTTACTATACCTACCCTATAAGCTCCGATGAAATCCTAGATCTTAAAATATGGAAAGGGCCCAAGGGGAAGGAGGTGTCGCGGCTTAAGCCGTGCAATGTGCTTTCATTTCTTTATGACGCCCTAAAAAATAAGAGCAGTAGCCTAGGGTTTTGGGCAAGACCCCCGGATCTTTTTAAGTCTTCGCCATTGGCATATCAACAAGATAACAATTCGTTTAATACGACCGAATTACCCATTATATGTTCTGCTGAAGTAATGTTTCTTACTCTCTTGAAAGAAATAATAAACTATCTGCAATTTATGAATGATCTTTGTGATACGTTCAATAACGAACAGTTAATAAAACGTCATGAAAATATTTGGATGCTTATTGAGCAAAGAAAAATATGA
Protein
MIDQKIFEITLNIDDPANFCTNVEAHLLKELENIYVGKCFKNSFIISITGVIQRSPCFIMRTNNSGRGYMHVRFSALVSYLNAFDLIAAVKIIKNDNNIILGESLLTEPVTIVIPSSESQNNVAEVGQIVPVQLANSSVYYIPGRQQASATGSIFIPKHTFSVYHVQEELTQEQALNLTKLVNVIETLLDSRSKKDFKHICFFEKLYYTYPISSDEILDLKIWKGPKGKEVSRLKPCNVLSFLYDALKNKSSSLGFWARPPDLFKSSPLAYQQDNNSFNTTELPIICSAEVMFLTLLKEIINYLQFMNDLCDTFNNEQLIKRHENIWMLIEQRKI

Summary

Similarity
Belongs to the asfivirus D339L family.
Keywords
Complete proteome   Reference proteome  
Feature
chain  Uncharacterized protein D339L
Pfam
PF03876   SHS2_Rpb7-N
Interpro
IPR005576   RNA_pol_Rpb7_N

Ontologies

KEGG

Subcellular Location

From MSLVP
Others-Single

Topology

Length:
335
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.32295
Exp number, first 60 AAs:
0.05128
Total prob of N-in:
0.08193
outside
1  -  335
 
 

Population Genetic Test Statistics

Pi
0.033856
Theta
0.0443727
Tajima's D
-0.682366
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62786.1
China_AnhuiXCGQ_2018 Protein
AYW34076.1
China_ASFV-SY18_2018 Protein
AKO62786.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95879.1
Poland_Pol16_20538_o9_2016-2017 Protein
CAN10204.1
Poland_Pol16_20540_o10_2016-2017 Protein
CAN10204.1
Poland_Pol16_29413_o23_2016-2017 Protein
CAN10204.1
Poland_Pol17_03029_C201_2016-2017 Protein
CAN10204.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96162.1
Poland_Pol17_05838_C220_2016-2017 Protein
CAN10204.1
Poland_ASFV_POL_Podlaskie_2015 Protein
CAN10204.1
Uganda_R8_2015 Protein
AXB49333.1
Uganda_R7_2015 Protein
AXB49507.1
Uganda_R25_2015 Protein
AXB49679.1
Uganda_N10_2015 Protein
AXB49850.1
Uganda_R35_2015 Protein
AXB50023.1
Estonia_2014 Protein
SPS73528.1
Italy_26544_OG10_2010 Protein
AJZ77093.1
Italy_47_Ss_2008_2008 Protein
AOO54462.1
Portugal_OURT_88.3_1988 Protein
CAN10454.1
Spain_E75_1975 Protein
CBH29205.1
Russia_Georgia_2007 Protein
CBW46771.1
Kenya_Tk1_2005 Protein
AJL34118.1
Kenya_Bus_2006 Protein
AJL34283.1
Russia_Odintsovo_2014 Protein
CAN10204.1
Portugal_L60_1960 Protein
AIY22296.1
Portugal_NHV_1968 Protein
AIY22454.1
Russia_Kashino_2013 Protein
CAN10204.1
Benin_1997 Protein
Protein
CAN10204.1
CAN10204.1
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979 Protein
CAN10204.1
Malawi_Lil_1983 Protein
CAN10204.1
Kenya_1950 Protein
CAN10204.1
Namibia_Warthog_1980 Protein
CAN10204.1
South_Africa_Warmbaths_1987 Protein
CAN10204.1
Malawi_Tengani_1962 Protein
CAN10204.1
China_HLJ_2018 Protein
QBH90593.1
China_LN_2018 Protein
QBH90778.1
China_wbBS01_2018 Protein
QDL88136.1
Ukraine_Kyiv_2014 Protein
QED21705.1
Belgium_Etalle_wb_2018 Protein
QED90548.1
Lithuania_LT14_2014 Protein
QEY87911.1
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983    
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