ASFVdb The African Swine Fever Virus Database
Strain
Uganda_R7_2015 (Region: Uganda, Tororo district;  Strain: R7;  Date: 2015)
Gene
B602L
Description
With frameshift mutation but translatable,  B602L
GenBank Accession
Full name
Protein B602L      
 

Sequence

CDS
ATGGCAGAATTTAATATTGATGAGCTTCTCAAAAACGTATTGGAGGATCCCTCCACTGAAATATCCGAAGAAACGCTTAAGCAACTTTATCAAAAAACAAATCCTTATAAACAGTTTAAAAATGATAGCAGGGTGGCCTTTTGCTCCTTTACAAATTTGCGGGAGCAGTATATTCGACGTCTTATAATGACTAGTTTTATTGGATACGTCTTCAAAGCTCTGCAGGAATGGATGCCCTCCTATTCAAAACCCACCTACACGACCAAAACGCTTCTCAGCGAGCTAATAACATTAGTTGATACTTTGAAACAGGAAACTAATGATGTTCCCTCTGAATCGGTAGTAAATACACTTTTATCTATAGCAGACAACTGCAAAACTCAAACACAGAAAAGCAAGGAAGCTAAAACAACAATCGACAGCTTTTTACGGGAACATTTTGTGTTTGATCCTAATCTTCATGCTCAAAGTGCGTATACCTGTGCAAGCACTTGTGCAAGCACTTGTGCAAGCACTTGTGCAAGCACTTGTGCAGACACCAATGTAGACACTTGTGCAAGCACTTGTGCAGACACTTGTGCAGACACCAATGTAGACACTTGTGCAAGCACTTGTGCAGATACTTGTGCAGACACTTGTGTAAGCACTTGTGTAAGCACTTGTGCAGATACTTGTGCAGACACCAATGTAGACACTTGTGCAAGCACTTGTGCAGACACCAATGTAGACACTTGTGTAAGCACTTGTGCAGACACCTGTGCAAGCACAGAATACACCGATTTAATGGATCCTGAGCGCATCCCTTTACACATCATGCAAAAAACATTAAATGTACCTAATGAGCTTCAGGCCGATATTGATGCAATCACTCAAACCCCACAGGGCTATAGGGCAGCAGCCCACATATTACAAAATATAGAACTTCACCAAAGCATAAAACATATGCTTGAAAATCCAAAGGTATTTAAACCCATTCTCTTTAATACAAAAATTACTAGATATCTTTCGCAACACATTCCACCTCAGGATACGTTTTATAAATGGAATTATTACATTGAGGATAATTACGAAGAGTTGCGGGCCGCTACGGAAAGCATCTACCCAGAAAAACCCGACCTAGAGTTTGCCTTTATTATTTATGATGTGGTGGATAGTAGTAGTAACCAGCAAAAGATTGATGAATTTTATTATAAATATAAAGACCAGATTTTCTCAGAGGTTTCATCCATTCAATTAGGCAACTGGACACTTCTGGGAAGCTTTAAGGCCAACAGAGAGCGCTACAACTATTTTAATCAAAATAATGAAATAATAAAACGGATTTTGGACCGTCATGAGGAAGATCTAAAAATAGGAAAAGAGATTTTACGAAATACCATTTACCACAAAAAAGCAAAAAATATACAAGAAACTGGCCCGGATGCTCCAGGGCTCTCCATCTATAATTCAACCTTTCACACAGACAGCGGGATTAAGGGACTGCTTTCCTTTAAGGAGCTA
Protein
MAEFNIDELLKNVLEDPSTEISEETLKQLYQKTNPYKQFKNDSRVAFCSFTNLREQYIRRLIMTSFIGYVFKALQEWMPSYSKPTYTTKTLLSELITLVDTLKQETNDVPSESVVNTLLSIADNCKTQTQKSKEAKTTIDSFLREHFVFDPNLHAQSAYTCASTCASTCASTCASTCADTNVDTCASTCADTCADTNVDTCASTCADTCADTCVSTCVSTCADTCADTNVDTCASTCADTNVDTCVSTCADTCASTEYTDLMDPERIPLHIMQKTLNVPNELQADIDAITQTPQGYRAAAHILQNIELHQSIKHMLENPKVFKPILFNTKITRYLSQHIPPQDTFYKWNYYIEDNYEELRAATESIYPEKPDLEFAFIIYDVVDSSSNQQKIDEFYYKYKDQIFSEVSSIQLGNWTLLGSFKANRERYNYFNQNNEIIKRILDRHEEDLKIGKEILRNTIYHKKAKNIQETGPDAPGLSIYNSTFHTDSGIKGLLSFKEL

Summary

Function
Plays an essential role in the assembly of the icosahedral capsid of the virus.
Similarity
Belongs to the asfivirus B602L family.
Keywords
Complete proteome   Host cytoplasm   Reference proteome   Repeat  
Feature
chain  Protein B602L
PDB
6EK9     E-value=0.427201,     Score=79

Ontologies

KEGG

Subcellular Location

From MSLVP
Capsid
From Uniprot
Host cytoplasm  

Topology

Length:
500
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05386
Exp number, first 60 AAs:
0.00663
Total prob of N-in:
0.00294
outside
1  -  500
 
 

Population Genetic Test Statistics

Pi
0.0294124
Theta
0.0386839
Tajima's D
-0.9015186
CLR
0.225628
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015 Protein
QED21663.1
Uganda_R7_2015 Protein
QED21663.1
Uganda_R25_2015 Protein
QED21663.1
Uganda_N10_2015    
Uganda_R35_2015 Protein
QED21663.1
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006 Protein
QED21663.1
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996 Protein
QED21663.1
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985    
South_Africa_2_2008 Protein
QED21663.1
Zambia_LIV_1983    
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号

In processing...
Login to ASFVdb
Email
Password
Please go to Regist if without an account.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
Change my password
Enter new password
Reenter new password
Regist an account of ASFVdb
It is required that you provide your institutional e-mail address (with edu or org in the domain) as confirmation of your affiliation.
Enter email
Reenter email
First Name
Last Name
Institution
You can directly go to if with an account.
Registraion Success
Your password has been sent to your email.
Please check it and login later.
Welcome to use ASFVdb.