ASFVdb The African Swine Fever Virus Database
Strain
Uganda_R8_2015 (Region: Uganda, Tororo district;  Strain: R8;  Date: 2015)
Gene
pD345L
Description
Annotated in NCBI,  Lambda-like exonuclease
GenBank Accession
Full name
Uncharacterized protein D345L      
 

Sequence

CDS
ATGGAAACCTTTGTGCGCCTGTTTAAAGACTCTCCTCAGCAGCGCTCCAATGCCTGGCATGCCACTCGTCGCACTCAGGTGGGTGGCTCTGACCTTGCTAGTGTTTTAGGTTTAAACCCTTACAAAAGTTATTATATAACCTTGGCGGAAAAAGCAAATCTTTTTAAGAAGAATTTAAACCACGCAGCTTGTAACTGGGGAACCCTTTTTGAGCGTGTGAGTAAAGATCTGCTTGAGTTGTTCTGCCAAACCACCGTAATAGGTGACAATATCCATATTGATGGGACCTATTTGGGATACCCCGGGCATAGCAATAGCCCTGACGGATTTTGCTACCTAACCCTGGGATACACTCAACAGTCCTGGGAAATCAAAACAATTTTTAACGATGTATGCTATGAAACCACGAAACGCATCCCCGTGTTGGTAGAAATAAAGTCCCCATTTAATCGAAAAATAAAAAACTCGGTGCCCTCCTACTATGTGCCCCAAATACAGTCTGGCCTTGCCCTTTCACCGCCTATTTCCATGGCCATCTATGTCGAGGCCATGTTTCGCGTATGCGGCATTCATCAGCTGGGATGGAATAATGAGACCAATACTGATATTCATCCTCCAGAGTCCATGCTCCCGCTTGCCTGGGGAATCATCACGATCTGCTCCACACAGGAGTACACCGAGGCTCCTCAGGATTTTGGCACGCTCAACGCGGAAACATTTCATCAATTCTTAGAAACGTTGTACCAAAAAGATCAGTACACGATTCACTATTCTATGCCCTATGAAACCGCGTGTCCTGAAATGTCAAATGTGGTTGGCTACTTTGGATGGAAGGTCTTTATCTTCCAAATAATTCCAGTTATGAAACATCCCCAGTTTTTAAAGGACAAATATCCCATTATACAACAGTTTTTACATGACCTACATACTATTCAAACCTCACCATCTCCCATGGAGGCTTATGAAAAGATCTGCTGCACAAAAGAAAGCGCTCTATCCACAGAGGACATCGATGATTTTACAAATATGCTTACTTAG
Protein
METFVRLFKDSPQQRSNAWHATRRTQVGGSDLASVLGLNPYKSYYITLAEKANLFKKNLNHAACNWGTLFERVSKDLLELFCQTTVIGDNIHIDGTYLGYPGHSNSPDGFCYLTLGYTQQSWEIKTIFNDVCYETTKRIPVLVEIKSPFNRKIKNSVPSYYVPQIQSGLALSPPISMAIYVEAMFRVCGIHQLGWNNETNTDIHPPESMLPLAWGIITICSTQEYTEAPQDFGTLNAETFHQFLETLYQKDQYTIHYSMPYETACPEMSNVVGYFGWKVFIFQIIPVMKHPQFLKDKYPIIQQFLHDLHTIQTSPSPMEAYEKICCTKESALSTEDIDDFTNMLT

Summary

Similarity
Belongs to the asfivirus D345L family.
Keywords
Complete proteome   Reference proteome  
Feature
chain  Uncharacterized protein D345L
Pfam
PF09588   YqaJ
PF10021   DUF2263
Interpro
IPR011335   Restrct_endonuc-II-like
IPR019080   YqaJ_viral_recombinase
IPR011604   Exonuc_phg/RecB_C
IPR017482   Phage_endonuclease_put
IPR019261   DUF2263
IPR012664   CHP02452
SUPFAM
SSF52980   SSF52980
Gene 3D
PDB
5YEU     E-value=0.228982,     Score=79

Ontologies

KEGG

Subcellular Location

From MSLVP
Cytoplasm

Topology

Length:
345
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.30697
Exp number, first 60 AAs:
0.01171
Total prob of N-in:
0.02037
outside
1  -  345
 
 

Population Genetic Test Statistics

Pi
0.039943
Theta
0.0489238
Tajima's D
-0.7755879
CLR
0.017429
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62790.1
China_AnhuiXCGQ_2018 Protein
AYW34080.1
China_ASFV-SY18_2018 Protein
AKO62790.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95883.1
Poland_Pol16_20538_o9_2016-2017 Protein
CAN10208.1
Poland_Pol16_20540_o10_2016-2017 Protein
CAN10208.1
Poland_Pol16_29413_o23_2016-2017 Protein
CAN10208.1
Poland_Pol17_03029_C201_2016-2017 Protein
CAN10208.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96166.1
Poland_Pol17_05838_C220_2016-2017 Protein
CAN10208.1
Poland_ASFV_POL_Podlaskie_2015 Protein
CAN10208.1
Uganda_R8_2015 Protein
AXB49338.1
Uganda_R7_2015 Protein
AXB49512.1
Uganda_R25_2015 Protein
AXB49684.1
Uganda_N10_2015 Protein
AXB49855.1
Uganda_R35_2015 Protein
AXB50028.1
Estonia_2014 Protein
SPS73532.1
Italy_26544_OG10_2010 Protein
AJZ77092.1
Italy_47_Ss_2008_2008 Protein
AOO54469.1
Portugal_OURT_88.3_1988 Protein
CAN10458.1
Spain_E75_1975 Protein
CBH29209.1
Russia_Georgia_2007 Protein
CBW46775.1
Kenya_Tk1_2005 Protein
AJL34122.1
Kenya_Bus_2006 Protein
AJL34287.1
Russia_Odintsovo_2014 Protein
CAN10208.1
Portugal_L60_1960 Protein
AIY22300.1
Portugal_NHV_1968 Protein
AIY22458.1
Russia_Kashino_2013 Protein
CAN10208.1
Benin_1997 Protein
Protein
CAN10208.1
CAN10208.1
South_Africa_KNP_Pretorisuskop_1996 Protein
CAN10208.1
South_Africa_MGR_Mkuzi_1979 Protein
CAN10208.1
Malawi_Lil_1983 Protein
CAN10208.1
Kenya_1950 Protein
CAN10208.1
Namibia_Warthog_1980 Protein
CAN10208.1
South_Africa_Warmbaths_1987 Protein
CAN10208.1
Malawi_Tengani_1962 Protein
CAN10208.1
China_HLJ_2018 Protein
QBH90597.1
China_LN_2018 Protein
QBH90782.1
China_wbBS01_2018 Protein
QDL88140.1
Ukraine_Kyiv_2014 Protein
QED21712.1
Belgium_Etalle_wb_2018 Protein
QED90552.1
Lithuania_LT14_2014 Protein
QEY87915.1
South_Africa_1985 Protein
CAN10208.1
South_Africa_2_2008 Protein
CAN10208.1
Zambia_LIV_1983    
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