ASFVdb The African Swine Fever Virus Database
Strain
Poland_Pol16_29413_o23_2016-2017 (Region: Poland;  Strain: Pol16_29413_o23;  Date: 2016-2017)
Gene
NifS-like protein
Description
Annoated by sequence mapping,  similar to pyridoxal phosphate-dependent aminotransferases of class V
GenBank Accession
Full name
NifS-like protein      
 

Sequence

CDS
ATGGCCTCCATTCTCACGCTGGACGGGTTATATGCAGAGGTTCCAAAATTCTTACCAGAGGCGTTACGAGAGGGCTGTGCTGGCAAGAATCCTCTAAGCTTTTATATTCAACAAATTTTAAATTTAATGGGATGTGACGGTAACGAGTACCATGTTCTTTTTACCAGCAGCTCCGAGGAAGCAAATACTCATATGATCATGGCCGCCGTGCGTCGCCATTTGCTGCGGACGCAGCAAAGGCCTCATGTCATTATCGGAGCAGCCGAGCCCCCTAGCGTCACCGAATGTGTGAAGGCATTGGCGCAGGAAAAACGCTGCGTATACACCATCATCCCCCTAAAAAATTTTGAAATAGATCCTGTTGCGGTATACGATGCCATACAAAGCAATACCTGCTTAGCGTGCATTTCAGGCACTAATGCTGTTGTCAAAACGTTCAACAAACTCCAGGACATCAGCAACGTGTTAAAAGGTATTCCCCTGCACTCAGAAGTGAGTGATCTTGTTTATCAAGGATGTATTCAACAAAATCCGCCCGCTGATAGTTTTTCAATAAATAGTCTCTACGGCTTCCTGGGAGTCGGTGTTTTGGGAATGAAGAAAAAGGTCATGCAAGGATTGGGGCCGCTCATTTTTGGAGGAGGGCTGAGAGGCGGAAGCCCTAATATACCCGGAATTCATGCCATGTATAAAACGCTAACCCAGCAAAGGCCTTCTATGAAAAAAATAAATACAATACATACGCTGTTCATGAAAACTTTAAAAAAACATCAGCATGTATATCTACCCATAGGGGGCGTGTCTGCAGAGGACACGTCTGCAGAAAACATATCTACAAAAGACATGCCTGTTGAAGGCCCGAAGGGACTCCCGGGCTATATTTTATTTAGCGTTGGCCGTCGCGCCGAGGAGCTACAAAAAAAAATTTTCACTAAATTTAATATAAAGGTTGGCCGTGTTGTTGACTTACAAGAGATACTGTTTCGTATCAAAATACCCCAAAAATACTGGGAGACATTATTGTTCATCCAATTAAGAGATAATTTGACCAAAGAGGACATAAAAAGAGTTATGGTTGTTTTGATGCATTTAGATACCATCACTCCTCGTGGCTCTCTTCCTCCTCCGAGCCACTCTTCTTCTTTTTCTTAA
Protein
MASILTLDGLYAEVPKFLPEALREGCAGKNPLSFYIQQILNLMGCDGNEYHVLFTSSSEEANTHMIMAAVRRHLLRTQQRPHVIIGAAEPPSVTECVKALAQEKRCVYTIIPLKNFEIDPVAVYDAIQSNTCLACISGTNAVVKTFNKLQDISNVLKGIPLHSEVSDLVYQGCIQQNPPADSFSINSLYGFLGVGVLGMKKKVMQGLGPLIFGGGLRGGSPNIPGIHAMYKTLTQQRPSMKKINTIHTLFMKTLKKHQHVYLPIGGVSAEDTSAENISTKDMPVEGPKGLPGYILFSVGRRAEELQKKIFTKFNIKVGRVVDLQEILFRIKIPQKYWETLLFIQLRDNLTKEDIKRVMVVLMHLDTITPRGSLPPPSHSSSFSX

Summary

Cofactor
pyridoxal 5'-phosphate
Similarity
Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
Keywords
Complete proteome   Pyridoxal phosphate   Reference proteome  
Feature
chain  NifS-like protein
Pfam
PF00266   Aminotran_5
Interpro
IPR015421   PyrdxlP-dep_Trfase_major
IPR015422   PyrdxlP-dep_Trfase_dom1
IPR015424   PyrdxlP-dep_Trfase
IPR000192   Aminotrans_V_dom
SUPFAM
SSF53383   SSF53383
Gene 3D
PDB
3LVM     E-value=6.84376e-05,     Score=110

Ontologies

KEGG

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
384
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05273
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00225
outside
1  -  384
 
 

Population Genetic Test Statistics

Pi
0.0477511
Theta
0.047786
Tajima's D
-0.7354786
CLR
0.000008
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62804.1
China_AnhuiXCGQ_2018 Protein
AYW34094.1
China_ASFV-SY18_2018 Protein
AKO62804.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95896.1
Poland_Pol16_20538_o9_2016-2017 Protein
CAN10223.1
Poland_Pol16_20540_o10_2016-2017 Protein
CAN10223.1
Poland_Pol16_29413_o23_2016-2017 Protein
CAN10223.1
Poland_Pol17_03029_C201_2016-2017 Protein
CAN10223.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96179.1
Poland_Pol17_05838_C220_2016-2017 Protein
CAN10223.1
Poland_ASFV_POL_Podlaskie_2015 Protein
CAN10223.1
Uganda_R8_2015 Protein
AXB49352.1
Uganda_R7_2015 Protein
AXB49526.1
Uganda_R25_2015 Protein
AXB49698.1
Uganda_N10_2015 Protein
AXB49869.1
Uganda_R35_2015 Protein
AXB50042.1
Estonia_2014 Protein
SPS73546.1
Italy_26544_OG10_2010 Protein
AJZ77079.1
Italy_47_Ss_2008_2008 Protein
AOO54490.1
Portugal_OURT_88.3_1988 Protein
CAN10472.1
Spain_E75_1975 Protein
CBH29223.1
Russia_Georgia_2007 Protein
CBW46789.1
Kenya_Tk1_2005 Protein
AJL34136.1
Kenya_Bus_2006 Protein
AJL34301.1
Russia_Odintsovo_2014 Protein
CAN10223.1
Portugal_L60_1960 Protein
AIY22314.1
Portugal_NHV_1968 Protein
AIY22472.1
Russia_Kashino_2013 Protein
CAN10223.1
Benin_1997 Protein
Protein
CAN10223.1
CAN10223.1
South_Africa_KNP_Pretorisuskop_1996 Protein
CAN10223.1
South_Africa_MGR_Mkuzi_1979 Protein
CAN10223.1
Malawi_Lil_1983 Protein
CAN10223.1
Kenya_1950 Protein
CAN10223.1
Namibia_Warthog_1980 Protein
CAN10223.1
South_Africa_Warmbaths_1987 Protein
CAN10223.1
Malawi_Tengani_1962 Protein
CAN10223.1
China_HLJ_2018 Protein
QBH90611.1
China_LN_2018 Protein
QBH90796.1
China_wbBS01_2018 Protein
QDL88154.1
Ukraine_Kyiv_2014 Protein
QED21736.1
Belgium_Etalle_wb_2018 Protein
QED90566.1
Lithuania_LT14_2014 Protein
QEY87929.1
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983    
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