ASFVdb The African Swine Fever Virus Database
Strain
Portugal_NHV_1968 (Region: Portugal;  Strain: NHV;  Date: 1968)
Gene
pM448R
Description
Annotated in NCBI,  similar to the T4 RNA ligase 1 (Rnl1) family of RNA ligases
GenBank Accession
Full name
Uncharacterized protein M448R      
 

Sequence

CDS
ATGTCAAATGAAAGTTTTCCCGAAACGTTGGAAAACCTACTTTCGACGTTACAGACCAAACAGCAAAACGCAATTCAGTCAGAGGTGATTGAATGGCTGCACAGCTTTTGTGAAACCTTTCACTTAAAAATACACTGCCATAAACAGTTTATTCCTAGCGGGGAAAAAAAACGAGCTAAAATACCTGCTCAGGAAATACAGGGAAACACGCAGCCCTCCCACCATGTGCACCGGGTTGTTCTTTCCAGAGCACAGCCGGTCAAAGCGCAGGAATCTCTGCTAACAACCATGTGCAACGGACTGGTGCTAGATGCAAACACATGGACATGTCTAGCCATTCCTCCGCCTGCGCCCTTTCAACAGGCGACCCGTCAAGTCCAACACTTTTACCGTAACAATTTCTACGAAGTGGTTCCCATCCAGGATGGCACCCTTCTCACAATCTACTACTGGGATGACCCCGAGCATGGCCCCTCCTGGTGCCTAGCAAGTACCCACGGATATGATGTGAGTAACTACTGTTGGATAGGCGACAAAACCTTCGCCGAGCTTGTATACGAATTGCTACAGCAGCACTCTACCTGCGACGTCACCCTGGAAAAAAATAAAACGCGGGGAACACGTCTTTTCTTTAACAACTTAAATCCCGATTACTGCTATACGATTGGAATTCGGCACCATAATTTACAGCCGCTTATCTATGACCCTCAAAATATTTGGGCGATTCAATCTACAAACCTAAAAACGCTTAAAACGGTATATCCAGAATACTACGGCTATATAGGCATTCCAGGAATTCAGAGTCAAGTTCCTGAGCTTCCCCAGTATGATTTACCTTATCTAATACGATCCTATAAGACTGCTATGAATCAAGCCAAAAATGCTATAAAAAATGGCAAAAAAGACAAGGAATACTTTAATTATGGCTATTTACTCATTTCGCGAGCGCCTGCCATTACTAAAAGTACTTCTAATGTTTTGTTAAAATCGCCTCTGCTGGTATTTTTACAAAAAAGTGTGTACCAGAAAAAACACAATATCTCTAACAGCCAGCGGCTAGAATTTATTATACTGCAAAACTACTTGATGCAGCATTTTCGAGATCATTTCATTGCTCTATTTCCGCAGTACATATCCTATTATACGAAATACCAAAACATGTTGAATATGATTATCCATAGTATTGCAACCAAAGATAAAGATCATCCCTTTGCAGGAGCCGTGGTAAAAAAAGTATTGGAAGATATTGAAAACGCCGAAAACATTATTGATCATACAACCATTCAAAACTATGCCCATCAAAGCAAGTACGCTATGCTTTACTTGTCAATTATTTCCCATTTTTAA
Protein
MSNESFPETLENLLSTLQTKQQNAIQSEVIEWLHSFCETFHLKIHCHKQFIPSGEKKRAKIPAQEIQGNTQPSHHVHRVVLSRAQPVKAQESLLTTMCNGLVLDANTWTCLAIPPPAPFQQATRQVQHFYRNNFYEVVPIQDGTLLTIYYWDDPEHGPSWCLASTHGYDVSNYCWIGDKTFAELVYELLQQHSTCDVTLEKNKTRGTRLFFNNLNPDYCYTIGIRHHNLQPLIYDPQNIWAIQSTNLKTLKTVYPEYYGYIGIPGIQSQVPELPQYDLPYLIRSYKTAMNQAKNAIKNGKKDKEYFNYGYLLISRAPAITKSTSNVLLKSPLLVFLQKSVYQKKHNISNSQRLEFIILQNYLMQHFRDHFIALFPQYISYYTKYQNMLNMIIHSIATKDKDHPFAGAVVKKVLEDIENAENIIDHTTIQNYAHQSKYAMLYLSIISHF

Summary

Similarity
Belongs to the asfivirus M448R family.
Keywords
Complete proteome   Reference proteome  
Feature
chain  Uncharacterized protein M448R
PDB
5GI4     E-value=1.62033,     Score=73

Ontologies

KEGG

Subcellular Location

From MSLVP
Nucleus

Topology

Length:
448
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04434
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00121
outside
1  -  448
 
 

Population Genetic Test Statistics

Pi
0.0404844
Theta
0.0466483
Tajima's D
-0.4639028
CLR
0.815664
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62743.1
China_AnhuiXCGQ_2018 Protein
AYW34033.1
China_ASFV-SY18_2018 Protein
AKO62743.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95836.1
Poland_Pol16_20538_o9_2016-2017 Protein
QED21629.1
Poland_Pol16_20540_o10_2016-2017 Protein
QED21629.1
Poland_Pol16_29413_o23_2016-2017 Protein
QED21629.1
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96024.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96119.1
Poland_Pol17_05838_C220_2016-2017 Protein
QED21629.1
Poland_ASFV_POL_Podlaskie_2015 Protein
QED21629.1
Uganda_R8_2015 Protein
AXB49290.1
Uganda_R7_2015 Protein
AXB49464.1
Uganda_R25_2015 Protein
AXB49636.1
Uganda_N10_2015 Protein
AXB49807.1
Uganda_R35_2015 Protein
AXB49980.1
Estonia_2014 Protein
SPS73484.1
Italy_26544_OG10_2010 Protein
AJZ77069.1
Italy_47_Ss_2008_2008 Protein
AOO54394.1
Portugal_OURT_88.3_1988 Protein
CAN10409.1
Spain_E75_1975 Protein
CBH29162.1
Russia_Georgia_2007 Protein
CBW46727.1
Kenya_Tk1_2005 Protein
AJL34075.1
Kenya_Bus_2006 Protein
AJL34240.1
Russia_Odintsovo_2014 Protein
QED21629.1
Portugal_L60_1960 Protein
AIY22253.1
Portugal_NHV_1968 Protein
AIY22411.1
Russia_Kashino_2013 Protein
QED21629.1
Benin_1997 Protein
CAN10161.1
South_Africa_KNP_Pretorisuskop_1996 Protein
QED21629.1
South_Africa_MGR_Mkuzi_1979 Protein
QED21629.1
Malawi_Lil_1983 Protein
QED21629.1
Kenya_1950 Protein
QED21629.1
Namibia_Warthog_1980 Protein
QED21629.1
South_Africa_Warmbaths_1987 Protein
QED21629.1
Malawi_Tengani_1962 Protein
QED21629.1
China_HLJ_2018 Protein
QBH90549.1
China_LN_2018 Protein
QBH90734.1
China_wbBS01_2018 Protein
QDL88092.1
Ukraine_Kyiv_2014 Protein
Protein
QED21629.1
QED21629.1
Belgium_Etalle_wb_2018 Protein
QED90504.1
Lithuania_LT14_2014 Protein
QEY87867.1
South_Africa_1985 Protein
QGM12914.1
South_Africa_2_2008 Protein
QGM12840.1
Zambia_LIV_1983 Protein
QGM12723.1
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