ASFVdb The African Swine Fever Virus Database
Strain
Portugal_NHV_1968 (Region: Portugal;  Strain: NHV;  Date: 1968)
Gene
T-lymphocyte CD2 receptor-like protein
Description
Annotated in NCBI,  membrane protein
GenBank Accession
 

Sequence

CDS
ATGGAGTACTTTAAATCAAACTGTATTTTAAATAATATTTTTACAATTAATGATACATATGGTGGTCTATTTTGGAATACATATTATGATAATAATCGTAGTAATTTTACTTATTGTGGAATAGCAGGAAATTATTGTTCATGTTGTGGTCATAACATATCATTGTATAATACAACAAATAATTGTAGTTTAATTATTTTTCCTAACAATACAGAAATATTTAATAGAACATATGAATTAGTATATTTGGACAAAAAAATTAATTATACAGTAAAACTATTAAAATCTGTTGATTCCCCAACTATTACATATAATTGTACTAATTCTTTAATAACATGTAAAAATAATAATGGGACAAATGTTAATATATATTTAATTATTAACAATACAATTGTTAATGATACTAATGGAGATATCCTTAATTATTATTGGAATGGTAATAATAATTTTACAGCTACATGTATGATTAATAATACAATTAGTTCATTGAATGAAACAGAAAATATAAATTGTACTAATCCAATATTAAAATATCAAAATTATTTATCCACATTATTTTATATCATAATTTTTATTGTGAGTGGATTAATAATAGGTATTTTTATTTCAATCATATCTGTATTATCTATACGAAGAAAAAGAAAAAAACATGTTGAAGAAATAGAAAGTCCACCACCCTCTGAATCTAATGAAGAAGATATTTCTCACGATGACACCACTTCCATACATGAACCATCCCCAGAGAACCATTACTTCCTAAGCCTTACAGTCGTTATCAGTATAATACACCTATTTACTACATGCGTCCCTCAACACAACCACTCAACCCATTTCCCCTACCTAAACCATGCCCGCCACCTAAACCATGTCCTCCACCCAAGCCATGCCCGCCACCCAAACCTGTCCTCCACCTAA
Protein
MEYFKSNCILNNIFTINDTYGGLFWNTYYDNNRSNFTYCGIAGNYCSCCGHNISLYNTTNNCSLIIFPNNTEIFNRTYELVYLDKKINYTVKLLKSVDSPTITYNCTNSLITCKNNNGTNVNIYLIINNTIVNDTNGDILNYYWNGNNNFTATCMINNTISSLNETENINCTNPILKYQNYLSTLFYIIIFIVSGLIIGIFISIISVLSIRRKRKKHVEEIESPPPSESNEEDISHDDTTSIHEPSPENHYFLSLTVVISIIHLFTTCVPQHNHSTHFPYLNHARHLNHVLHPSHARHPNLSST

Summary

Interpro
IPR036179   Ig-like_dom_sf
IPR013783   Ig-like_fold
SUPFAM
SSF48726   SSF48726
Gene 3D
PDB
1HNG     E-value=0.000874314,     Score=101

Ontologies

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
304
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
33.7384
Exp number, first 60 AAs:
1.87999
Total prob of N-in:
0.14174
outside
1  -  185
TMhelix
186  -  208
inside
209  -  304
 
 

Population Genetic Test Statistics

Pi
0.1564327
Theta
0.1942611
Tajima's D
-0.922727
CLR
0.835206
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62740.1
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010 Protein
AJZ77076.1
Italy_47_Ss_2008_2008 Protein
AOO54390.1
Portugal_OURT_88.3_1988 Protein
CAN10406.1
Spain_E75_1975 Protein
CBH29159.1
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968 Protein
AIY22408.1
Russia_Kashino_2013    
Benin_1997 Protein
Protein
CAN10158.1
CAN10158.1
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979 Protein
AIY22249.1
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980 Protein
QGM12720.1
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983    
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