ASFVdb The African Swine Fever Virus Database
Strain
Kenya_Bus_2006 (Region: Kenya;  Strain: Ken06.Bus;  Date: 2006)
Gene
BA71V-H108R (j5R)
Description
Annotated in NCBI,  similar to African swine fever virus E75 strain E75 of INSD accession FN557520
GenBank Accession
Full name
Protein H108R      
 

Sequence

CDS
ATGGTGAATCTTTTTCCTGTTTTTACCTTAATTGTGATTATTACAATTTTAATTACGACTCGAGAGTTGTCTACCACGATGCTCATTGTTTCTCTTGTAACAGATTATATTATTATTAATACGCAGTATACGGAGCAGCAGCATGAAATGAACAAATTTTCAGCGCAACAGGGGTTGCAAAAAAATTCTTTTGACGAATCTTATAATAAAGACAAAAAACCTAATACACATATTTCCTACCAGTGGCTGGCGCCTGAACTGAAGGAAGCTGAGAACAAGTACTGGTGGGGCAATGATGATCCTTATAGCCAGCCCGTTCTCGCTGACGCATCTTGA
Protein
MVNLFPVFTLIVIITILITTRELSTTMLIVSLVTDYIIINTQYTEQQHEMNKFSAQQGLQKNSFDESYNKDKKPNTHISYQWLAPELKEAENKYWWGNDDPYSQPVLADAS

Summary

Similarity
Belongs to the asfivirus H108R family.
Keywords
Complete proteome   Late protein   Membrane   Transmembrane   Transmembrane helix   Virion   Glycoprotein   Reference proteome  
Feature
chain  Protein H108R
PDB
1JNZ     E-value=6.92008,     Score=67

Ontologies

KEGG

Subcellular Location

From MSLVP
Single-Pass Membrane
From Uniprot
Virion membrane   Detected mainly on membrane-like structures within viral factories.   With evidence from 1 publications.

Topology

Length:
111
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.02657
Exp number, first 60 AAs:
21.02657
Total prob of N-in:
0.52472
POSSIBLE N-term signal
sequence
outside
1  -  9
TMhelix
10  -  32
inside
33  -  111
 
 

Population Genetic Test Statistics

Pi
0.0384492
Theta
0.0463024
Tajima's D
-0.8121945
CLR
0.212987
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015 Protein
AXB49346.1
Uganda_R7_2015 Protein
AXB49520.1
Uganda_R25_2015 Protein
AXB49692.1
Uganda_N10_2015 Protein
AXB49863.1
Uganda_R35_2015 Protein
AXB50036.1
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005 Protein
AJL34130.1
Kenya_Bus_2006 Protein
AJL34295.1
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985 Protein
Protein
QGM12936.1
QGM12936.1
South_Africa_2_2008 Protein
Protein
QGM12936.1
QGM12862.1
Zambia_LIV_1983 Protein
Protein
QGM12936.1
QGM12755.1
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