ASFVdb The African Swine Fever Virus Database
Strain
Italy_26544_OG10_2010 (Region: Sardinian,Italy;  Strain: 26544/OG10;  Date: 2010)
Gene
EP364R
Description
Annotated in NCBI,  similar to ERCC4-type DNA repair nuclease
GenBank Accession
Full name
ERCC4 domain-containing protein EP364R      
 

Sequence

CDS
ATGTATTTTCTAGTGGCGGATCATCGAGAACATCATGTGATTCCTTTTCTTAAAACCGATTTTCATGATATGCAACATAATCCAATGTTTACGCAAAAGCAAGCTCTCCTGGAAATCAAGCAGCTTTTTACCGGAGATTATCTCATCTGCAAAAGCCCTACCACTATTCTGGCCTGTATTGAACGAAAAACCTACAAAGACTTTGCGGCTTCTTTGAAAGATGGACGTTATAAAAATCGCCAAAAAATGCTATCGCTGCGAGAACAAACCAACTGTCAACTTTATTTTTTTGTAGAAGGCCCGGCATTCCCTAACCCTCAAAAAAAAATTAATCACGTTGCCTATGCAAGCATTATTACTGCTATGACGCATCTTATGGTTAGAGATCATATTTTTGTCATTCAAACGAAAAATGAGGCCCACAGTTCCCAAAAGCTTGTGCAGCTTTTTTATGCCTTTTCTAAGGAAATGGTGTGCGTCGTTCCCACCTCCCTCACCCCCACGGATGAAGAGCTATGCATCAAGCTATGGTCTTCTCTTTCTGGTATTTCAGGCGTGATAGGTAAAATCTTGGCAAATACTTGTTCCGTAGCTCATTTGGTTAGTGGAAAGCTTTCATCGCAGAATATTGATCAGTTAAAAACTCCCTCCAATCGGCCATTCCCCAAAAAAGTAAAACGTATGCTTATAAGCATTAGCAAAGGAAATAAGGAGTTAGAAATAAAACTGCTCTCGGGGGTTCCCAATATCGGGAAAAAATTAGCTGCCGAAATTTTAAAAGATCATGCGCTTCTTTTTTTTCTAAATCAGCCCGTAGAATGCTTGGCAAATATACAAATTGTTCAAAAAACCCGTACGATTAAGTTGGGAATGAAGCGAGCCGAAGCGATTCATTATTTTTTAAACTGGTGTGGGTCTGCCCATGTAACCGATGATAGCCAAAATATCACAGAGGCGTCGCGGCCCGCAACACAGCCTGCTGCAACGCAGCCATTGCACGAAGTATCAGATGATGCAACATCTAATGCATCAGATACATCCTCACCCATAGGGCATCAAACATTATCTAAAGAAATGTTATTGAACACAGCCTGA
Protein
MYFLVADHREHHVIPFLKTDFHDMQHNPMFTQKQALLEIKQLFTGDYLICKSPTTILACIERKTYKDFAASLKDGRYKNRQKMLSLREQTNCQLYFFVEGPAFPNPQKKINHVAYASIITAMTHLMVRDHIFVIQTKNEAHSSQKLVQLFYAFSKEMVCVVPTSLTPTDEELCIKLWSSLSGISGVIGKILANTCSVAHLVSGKLSSQNIDQLKTPSNRPFPKKVKRMLISISKGNKELEIKLLSGVPNIGKKLAAEILKDHALLFFLNQPVECLANIQIVQKTRTIKLGMKRAEAIHYFLNWCGSAHVTDDSQNITEASRPATQPAATQPLHEVSDDATSNASDTSSPIGHQTLSKEMLLNTA

Summary

Catalytic Activity
L-lysyl-[histone] + S-adenosyl-L-methionine = H(+) + N(6)-methyl-L-lysyl-[histone] + S-adenosyl-L-homocysteine
Similarity
Belongs to the asfivirus EP364R family.
Keywords
Complete proteome   Reference proteome  
Feature
chain  ERCC4 domain-containing protein EP364R
Pfam
PF02732   ERCC4
PF00397   WW
PF17907   AWS
PF00856   SET
Interpro
IPR006166   ERCC4_domain
IPR011335   Restrct_endonuc-II-like
IPR027421   DNA_pol_lamdba_lyase_dom_sf
IPR003583   Hlx-hairpin-Hlx_DNA-bd_motif
IPR003616   Post-SET_dom
IPR001214   SET_dom
IPR036020   WW_dom_sf
IPR001202   WW_dom
IPR006560   AWS_dom
SUPFAM
SSF52980   SSF52980
SSF47802   SSF47802
SSF51045   SSF51045
Gene 3D
PDB
2BGW     E-value=0.000323422,     Score=104

Ontologies

KEGG

Subcellular Location

From MSLVP
Cytoplasm
From Uniprot
Nucleus  

Topology

Length:
364
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.10187
Exp number, first 60 AAs:
0.00136
Total prob of N-in:
0.01340
outside
1  -  364
 
 

Population Genetic Test Statistics

Pi
0.0331775
Theta
0.0420983
Tajima's D
-0.8741474
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62741.1
China_AnhuiXCGQ_2018 Protein
AYW34031.1
China_ASFV-SY18_2018 Protein
AKO62741.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95834.1
Poland_Pol16_20538_o9_2016-2017 Protein
AJL34238.1
Poland_Pol16_20540_o10_2016-2017 Protein
AJL34238.1
Poland_Pol16_29413_o23_2016-2017 Protein
AJL34238.1
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96022.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96117.1
Poland_Pol17_05838_C220_2016-2017 Protein
AJL34238.1
Poland_ASFV_POL_Podlaskie_2015 Protein
AJL34238.1
Uganda_R8_2015 Protein
AXB49288.1
Uganda_R7_2015 Protein
AXB49462.1
Uganda_R25_2015 Protein
AXB49634.1
Uganda_N10_2015 Protein
AXB49805.1
Uganda_R35_2015 Protein
AXB49978.1
Estonia_2014 Protein
SPS73482.1
Italy_26544_OG10_2010 Protein
AJZ77081.1
Italy_47_Ss_2008_2008 Protein
AOO54392.1
Portugal_OURT_88.3_1988 Protein
CAN10407.1
Spain_E75_1975 Protein
CBH29160.1
Russia_Georgia_2007 Protein
CBW46725.1
Kenya_Tk1_2005    
Kenya_Bus_2006 Protein
Protein
AJL34238.1
AJL34238.1
Russia_Odintsovo_2014 Protein
AJL34238.1
Portugal_L60_1960 Protein
AIY22250.1
Portugal_NHV_1968 Protein
AIY22409.1
Russia_Kashino_2013 Protein
AJL34238.1
Benin_1997 Protein
CAN10159.1
South_Africa_KNP_Pretorisuskop_1996 Protein
AJL34238.1
South_Africa_MGR_Mkuzi_1979 Protein
AJL34238.1
Malawi_Lil_1983 Protein
AJL34238.1
Kenya_1950    
Namibia_Warthog_1980 Protein
AJL34238.1
South_Africa_Warmbaths_1987 Protein
AJL34238.1
Malawi_Tengani_1962 Protein
AJL34238.1
China_HLJ_2018 Protein
QBH90547.1
China_LN_2018 Protein
QBH90732.1
China_wbBS01_2018 Protein
QDL88090.1
Ukraine_Kyiv_2014 Protein
Protein
Protein
QED21623.1
QED21624.1
QED21625.1
Belgium_Etalle_wb_2018 Protein
QED90502.1
Lithuania_LT14_2014 Protein
QEY87865.1
South_Africa_1985 Protein
QGM12913.1
South_Africa_2_2008 Protein
QGM12839.1
Zambia_LIV_1983 Protein
QGM12721.1
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