ASFVdb The African Swine Fever Virus Database
Strain
Russia_Georgia_2007 (Region: Russia;  Strain: Georgia 2007/1;  Date: 2007)
Gene
EP402R
Description
Annotated in NCBI,  EP402R
GenBank Accession
Full name
CD2 homolog      
Alternative Name
5HL
CD2v
PEP402R
T-lymphocyte CD2 receptor-like protein
 

Sequence

CDS
ATGATAATACTTATTTTTTTAATATTTTCTAACATAGTTTTAAGTATTGATTATTGGGTTAGTTTTAATAAAACAATAATTTTAGATAGTAATATTACTAATGATAATAATGATATAAATGGAGTATCATGGAATTTTTTTAATAATTCTTTTAATACACTAGCTACATGTGGAAAAGCAGGTAACTTTTGTGAATGTTCTAATTATAGTACATCAATATATAATATAACAAATAATTGTAGCTTAACTATTTTTCCTCATAATGATGTATTTGATACAACATATCAAGTAGTATGGAATCAAATAATTAATTATACAATAAAATTATTAACACCTGCTACTCCCCCAAATATCACATATAATTGTACTAATTTTTTAATAACATGTAAAAAAAATAATGGAACAAACACTAATATATATTTAAATATAAATGATACTTTTGTTAAATATACTAATGAAAGTATACTTGAATATAACTGGAATAATAGTAACATTAACAATTTTACAGCTACATGTATAATTAATAATACAATTAGTACATCTAATGAAACAACACTTATAAATTGTACTTATTTAACATTGTCATCTAACTATTTTTATACTTTTTTTAAATTATATTATATTCCATTAAGCATCATAATTGGGATAACAATAAGTATTCTTCTTATATCCATCATAACTTTTTTATCTTTACGAAAAAGAAAAAAACATGTTGAAGAAATAGAAAGTCCACCACCTGAATCTAATGAAGAAGAACAATGTCAGCATGATGACACCACTTCCATACATGAACCATCTCCCAGAGAACCATTACTTCCTAAGCCTTACAGTCGTTATCAGTATAATACACCTATTTACTACATGCGTCCCTCAACACAACCACTCAACCCATTTCCCTTACCTAAACCGTGTCCTCCACCCAAACCATGTCCGCCACCCAAACCATGTCCTCCACCTAAACCATGTCCTTCAGCTGAATCCTATTCTCCACCCAAACCACTACCTAGTATCCCGCTACTACCCAATATCCCGCCATTATCTACCCAAAATATTTCGCTTATTCACGTAGATAGAATTATTTAA
Protein
MIILIFLIFSNIVLSIDYWVSFNKTIILDSNITNDNNDINGVSWNFFNNSFNTLATCGKAGNFCECSNYSTSIYNITNNCSLTIFPHNDVFDTTYQVVWNQIINYTIKLLTPATPPNITYNCTNFLITCKKNNGTNTNIYLNINDTFVKYTNESILEYNWNNSNINNFTATCIINNTISTSNETTLINCTYLTLSSNYFYTFFKLYYIPLSIIIGITISILLISIITFLSLRKRKKHVEEIESPPPESNEEEQCQHDDTTSIHEPSPREPLLPKPYSRYQYNTPIYYMRPSTQPLNPFPLPKPCPPPKPCPPPKPCPPPKPCPSAESYSPPKPLPSIPLLPNIPPLSTQNISLIHVDRII

Summary

Function
May play an immunosuppressive role by inhibiting lymphocyte proliferation and subsequently facilitating viral replication and generalization of infection (By similarity). Responsible for viral hemadsorption, which may help viral spread. Increases virus replication in the tick vector at the step of virus uptake or replication in the tick gut. May play a role in the host Golgi reorganization to yield viral factories (By similarity).
Subunit
Both glycosylated and nonglycosylated forms interact (via C-terminus) with the host AP-1 complex.
Similarity
Belongs to the asfivirus CD2 homolog protein family.
Keywords
Complete proteome   Disulfide bond   Glycoprotein   Host membrane   Late protein   Membrane   Receptor   Signal   Transmembrane   Transmembrane helix  
Feature
chain  CD2 homolog
Interpro
IPR036179   Ig-like_dom_sf
IPR013783   Ig-like_fold
SUPFAM
SSF48726   SSF48726
Gene 3D

Ontologies

Subcellular Location

From MSLVP
Multi-Pass Membrane
From Uniprot
Host membrane   Localizes around the cytoplasmic viral factories which are probably derived from the host Golgi membrane (By similarity). Both proteolytic fragments localize to membrane compartments (By similarity).   With evidence from 2 publications.

Topology

Length:
360
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
31.89618
Exp number, first 60 AAs:
8.46279
Total prob of N-in:
0.37060
outside
1  -  206
TMhelix
207  -  229
inside
230  -  360
 
 

Population Genetic Test Statistics

Pi
0.1492218
Theta
0.1854133
Tajima's D
-0.9262052
CLR
0.870677
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018 Protein
AYW34030.1
China_ASFV-SY18_2018 Protein
CBW46724.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95833.1
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96021.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96116.1
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014 Protein
SPS73481.1
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007 Protein
CBW46724.1
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018 Protein
QBH90546.1
China_LN_2018 Protein
QBH90731.1
China_wbBS01_2018 Protein
QDL88089.1
Ukraine_Kyiv_2014 Protein
QED21622.1
Belgium_Etalle_wb_2018 Protein
QED90501.1
Lithuania_LT14_2014 Protein
QEY87864.1
South_Africa_1985 Protein
Protein
QGM12912.1
QGM12912.1
South_Africa_2_2008    
Zambia_LIV_1983    
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号

In processing...
Login to ASFVdb
Email
Password
Please go to Regist if without an account.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
Change my password
Enter new password
Reenter new password
Regist an account of ASFVdb
It is required that you provide your institutional e-mail address (with edu or org in the domain) as confirmation of your affiliation.
Enter email
Reenter email
First Name
Last Name
Institution
You can directly go to if with an account.
Registraion Success
Your password has been sent to your email.
Please check it and login later.
Welcome to use ASFVdb.