ASFVdb The African Swine Fever Virus Database
Strain
South_Africa_Warmbaths_1987 (Region: South Africa, Warmbaths;  Strain: Warmbaths;  Date: 1987)
Gene
pCP123L
Description
Annoated by sequence mapping,  Putative transmembrane protein
GenBank Accession
Full name
Uncharacterized protein CP123L      
 

Sequence

CDS
ATGCCCTCGACTGGGACACTGGTTATCATATTTGCGATAGTCCTTATTCTTTGTATTATGCTTCTATTTTTTTATAAAACGGTTGAAGCGGAAAAGCCGGGTGTACTTCCTCCACCCATTCCTCCACCCACCCCGCCTCCTCCCAAAAAAAAATATGACCACAATGAGTATATGGAGAAGACAGATCTAGAACCCGAGGTGAAAAAAAATCATAGAAAATGGGCAAACGAGGCCGAACACCTTATTTCTTCATCCGTGAAAGGGTTAGAAAATCTTGATGAAACCGCTTTTTTGGCGAATCATAAGGGCCATGGGTTTAGAACCTTTGACCACGCGAAGTCCTTGTTTAAAGAGTTTCTTAAGAAGTATTAG
Protein
MPSTGTLVIIFAIVLILCIMLLFFYKTVEAEKPGVLPPPIPPPTPPPPKKKYDHNEYMEKTDLEPEVKKNHRKWANEAEHLISSSVKGLENLDETAFLANHKGHGFRTFDHAKSLFKEFLKKY

Summary

Similarity
Belongs to the asfivirus CP123L family.
Keywords
Complete proteome   Host membrane   Membrane   Reference proteome   Transmembrane   Transmembrane helix  
Feature
chain  Uncharacterized protein CP123L

Ontologies

KEGG

Subcellular Location

From MSLVP
Single-Pass Membrane
From Uniprot
Host membrane  

Topology

Length:
123
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
20.53856
Exp number, first 60 AAs:
20.53856
Total prob of N-in:
0.31479
POSSIBLE N-term signal
sequence
outside
1  -  4
TMhelix
5  -  24
inside
25  -  123
 
 

Population Genetic Test Statistics

Pi
0.0336409
Theta
0.0353436
Tajima's D
-0.3314224
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62772.1
China_AnhuiXCGQ_2018 Protein
AYW34062.1
China_ASFV-SY18_2018 Protein
CBW46757.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95865.1
Poland_Pol16_20538_o9_2016-2017 Protein
CAN10190.1
Poland_Pol16_20540_o10_2016-2017 Protein
CAN10190.1
Poland_Pol16_29413_o23_2016-2017 Protein
CAN10190.1
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96053.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96148.1
Poland_Pol17_05838_C220_2016-2017 Protein
CAN10190.1
Poland_ASFV_POL_Podlaskie_2015 Protein
CAN10190.1
Uganda_R8_2015 Protein
AXB49319.1
Uganda_R7_2015 Protein
AXB49493.1
Uganda_R25_2015 Protein
AXB49665.1
Uganda_N10_2015 Protein
AXB49836.1
Uganda_R35_2015 Protein
AXB50009.1
Estonia_2014 Protein
SPS73514.1
Italy_26544_OG10_2010 Protein
AJZ77165.1
Italy_47_Ss_2008_2008 Protein
AOO54439.1
Portugal_OURT_88.3_1988 Protein
CAN10440.1
Spain_E75_1975 Protein
CBH29191.1
Russia_Georgia_2007 Protein
CBW46757.1
Kenya_Tk1_2005 Protein
AJL34104.1
Kenya_Bus_2006 Protein
AJL34269.1
Russia_Odintsovo_2014 Protein
CAN10190.1
Portugal_L60_1960 Protein
AIY22282.1
Portugal_NHV_1968 Protein
AIY22440.1
Russia_Kashino_2013 Protein
CAN10190.1
Benin_1997 Protein
Protein
CAN10190.1
CAN10190.1
South_Africa_KNP_Pretorisuskop_1996 Protein
CAN10190.1
South_Africa_MGR_Mkuzi_1979 Protein
CAN10190.1
Malawi_Lil_1983 Protein
CAN10190.1
Kenya_1950 Protein
CAN10190.1
Namibia_Warthog_1980 Protein
CAN10190.1
South_Africa_Warmbaths_1987 Protein
CAN10190.1
Malawi_Tengani_1962 Protein
CAN10190.1
China_HLJ_2018 Protein
QBH90579.1
China_LN_2018 Protein
QBH90764.1
China_wbBS01_2018 Protein
QDL88122.1
Ukraine_Kyiv_2014 Protein
QED21683.1
Belgium_Etalle_wb_2018 Protein
QED90534.1
Lithuania_LT14_2014 Protein
QEY87897.1
South_Africa_1985 Protein
CAN10190.1
South_Africa_2_2008 Protein
CAN10190.1
Zambia_LIV_1983 Protein
CAN10190.1
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